miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21465 5' -59.5 NC_004812.1 + 148936 0.71 0.479018
Target:  5'- cGUCGgCGACGacGGUggUCGGGGCGCgagaGCg -3'
miRNA:   3'- -CAGUgGCUGU--UCG--AGCCCCGCGa---CGa -5'
21465 5' -59.5 NC_004812.1 + 151330 0.72 0.40776
Target:  5'- gGUCGCCGAgucggcCGAGCgCGGGGcCGCgGCg -3'
miRNA:   3'- -CAGUGGCU------GUUCGaGCCCC-GCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 70033 0.72 0.424958
Target:  5'- -cCGCgGACAGGCg-GGGGCGCUcGCc -3'
miRNA:   3'- caGUGgCUGUUCGagCCCCGCGA-CGa -5'
21465 5' -59.5 NC_004812.1 + 26727 0.71 0.451545
Target:  5'- cGUCGCaCGGCGGGC-CGuGGGCGUUGg- -3'
miRNA:   3'- -CAGUG-GCUGUUCGaGC-CCCGCGACga -5'
21465 5' -59.5 NC_004812.1 + 31716 0.71 0.451545
Target:  5'- cGUCAgggccUCGGCGAGCUCGGccgagaGGCGCgggGCg -3'
miRNA:   3'- -CAGU-----GGCUGUUCGAGCC------CCGCGa--CGa -5'
21465 5' -59.5 NC_004812.1 + 122355 0.71 0.451545
Target:  5'- uUC-CCGGCGggGGC-CGGGGCGCgggGCg -3'
miRNA:   3'- cAGuGGCUGU--UCGaGCCCCGCGa--CGa -5'
21465 5' -59.5 NC_004812.1 + 26617 0.71 0.460609
Target:  5'- gGUCACCGACGacagcAGCgccucgUGGGuGCGCUGgUa -3'
miRNA:   3'- -CAGUGGCUGU-----UCGa-----GCCC-CGCGACgA- -5'
21465 5' -59.5 NC_004812.1 + 734 0.71 0.479018
Target:  5'- gGUCGCCGGCGGGggUGGGG-GCgGCg -3'
miRNA:   3'- -CAGUGGCUGUUCgaGCCCCgCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 105192 0.71 0.479018
Target:  5'- --uGCCuGCGAGCgCGGGGCGCggGCg -3'
miRNA:   3'- cagUGGcUGUUCGaGCCCCGCGa-CGa -5'
21465 5' -59.5 NC_004812.1 + 30103 0.72 0.399326
Target:  5'- aGUCGgCGugGGGCUgCGGGGCGCa--- -3'
miRNA:   3'- -CAGUgGCugUUCGA-GCCCCGCGacga -5'
21465 5' -59.5 NC_004812.1 + 95499 0.73 0.36673
Target:  5'- -gCGCCGGCGcGCcgCGGGGCGCcGCc -3'
miRNA:   3'- caGUGGCUGUuCGa-GCCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 13120 0.73 0.36673
Target:  5'- cUCGCCGcgucCAGGC-CGGGGCGgaGCa -3'
miRNA:   3'- cAGUGGCu---GUUCGaGCCCCGCgaCGa -5'
21465 5' -59.5 NC_004812.1 + 47722 0.76 0.226761
Target:  5'- --gGCCGGCGcgaGGCggCGGGGUGCUGCa -3'
miRNA:   3'- cagUGGCUGU---UCGa-GCCCCGCGACGa -5'
21465 5' -59.5 NC_004812.1 + 155685 0.76 0.237867
Target:  5'- -gCGCCGGCGGGCUCGGcGcGCGCgaggGCg -3'
miRNA:   3'- caGUGGCUGUUCGAGCC-C-CGCGa---CGa -5'
21465 5' -59.5 NC_004812.1 + 127513 0.76 0.243588
Target:  5'- -cCGCCGGCGGucGCUCGGGGCGCcgacgccgGCg -3'
miRNA:   3'- caGUGGCUGUU--CGAGCCCCGCGa-------CGa -5'
21465 5' -59.5 NC_004812.1 + 32329 0.74 0.300317
Target:  5'- cGUCACCGGCcgcuAGCUCuccggagacgGGGGCGCcGCc -3'
miRNA:   3'- -CAGUGGCUGu---UCGAG----------CCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 7904 0.74 0.307215
Target:  5'- gGUCGCCcGCAGGUgUCGGGG-GCUGCg -3'
miRNA:   3'- -CAGUGGcUGUUCG-AGCCCCgCGACGa -5'
21465 5' -59.5 NC_004812.1 + 49736 0.74 0.307215
Target:  5'- --gGCCGACGGGgUCGGGGuCGCgGCg -3'
miRNA:   3'- cagUGGCUGUUCgAGCCCC-GCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 21152 0.73 0.358093
Target:  5'- uGUCGCCGGCGcgcAGCUCGcggaggaggcgcuGGGCGCggaggGCg -3'
miRNA:   3'- -CAGUGGCUGU---UCGAGC-------------CCCGCGa----CGa -5'
21465 5' -59.5 NC_004812.1 + 60855 0.73 0.358872
Target:  5'- --gGCgCGuCAGGUUCGGGGCGCgcgGCUg -3'
miRNA:   3'- cagUG-GCuGUUCGAGCCCCGCGa--CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.