miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 3' -60.8 NC_004812.1 + 1570 0.66 0.739769
Target:  5'- cCCCGgGUUCCCGGaAG-AGCCCUc-- -3'
miRNA:   3'- -GGGCgCAGGGGCCgUCuUUGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 5909 0.66 0.730446
Target:  5'- gCCGCcggg-CGGCAGGcaGACCCCGGGg -3'
miRNA:   3'- gGGCGcagggGCCGUCU--UUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 3440 0.66 0.739769
Target:  5'- gCCGCGcCCCCcGUGGu--CCCCGuGg -3'
miRNA:   3'- gGGCGCaGGGGcCGUCuuuGGGGCuC- -5'
21476 3' -60.8 NC_004812.1 + 35727 0.66 0.721047
Target:  5'- cCCCGCGUCUCCG-Cccc-GCCCCGc- -3'
miRNA:   3'- -GGGCGCAGGGGCcGucuuUGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 143006 0.66 0.72951
Target:  5'- gCCUGUuUCCCCugagucuGGUGGAGuuccCCCCGGGg -3'
miRNA:   3'- -GGGCGcAGGGG-------CCGUCUUu---GGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 127186 0.66 0.730446
Target:  5'- cCCCGCGUCcgccuCCCGaaaGCGGAc-CCCCGc- -3'
miRNA:   3'- -GGGCGCAG-----GGGC---CGUCUuuGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 74310 0.66 0.739769
Target:  5'- gCCCGgG-CUCCGcGCGcGGGCCUCGAGc -3'
miRNA:   3'- -GGGCgCaGGGGC-CGUcUUUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 18594 0.66 0.730446
Target:  5'- aCCCGCG---CCGGCGGcg-UCCCGGGg -3'
miRNA:   3'- -GGGCGCaggGGCCGUCuuuGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 10772 0.66 0.721047
Target:  5'- gCCGCaagacaGUCCCCgGGCGuGGGCCgCCGAc -3'
miRNA:   3'- gGGCG------CAGGGG-CCGUcUUUGG-GGCUc -5'
21476 3' -60.8 NC_004812.1 + 48965 0.66 0.739769
Target:  5'- gCCGC--CCCCGGCGacguGCCCCGcGa -3'
miRNA:   3'- gGGCGcaGGGGCCGUcuu-UGGGGCuC- -5'
21476 3' -60.8 NC_004812.1 + 3881 0.66 0.730446
Target:  5'- gCCCGCaagCgCCCGGCcuccGCCuCCGAGg -3'
miRNA:   3'- -GGGCGca-G-GGGCCGucuuUGG-GGCUC- -5'
21476 3' -60.8 NC_004812.1 + 127087 0.66 0.721047
Target:  5'- gCCCGgGUCCCCcccGCAcGGcuCCCCGc- -3'
miRNA:   3'- -GGGCgCAGGGGc--CGU-CUuuGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 125336 0.66 0.730446
Target:  5'- gCCGCGggaugCgCCGGCGGcgGCCgaGAGu -3'
miRNA:   3'- gGGCGCa----GgGGCCGUCuuUGGggCUC- -5'
21476 3' -60.8 NC_004812.1 + 32728 0.66 0.721047
Target:  5'- -gCGCGUCCCgCGGCAuGuacgcggcGAACaCCGAGg -3'
miRNA:   3'- ggGCGCAGGG-GCCGU-C--------UUUGgGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 93773 0.66 0.770781
Target:  5'- aCCaCGUCCaccucgaaguggUCGGCGGAGAugcugcggaggagccCCCCGGGg -3'
miRNA:   3'- gGGcGCAGG------------GGCCGUCUUU---------------GGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 92580 0.66 0.721047
Target:  5'- aCUGCcg-CCUGGCGcuccGggGCCCCGAGc -3'
miRNA:   3'- gGGCGcagGGGCCGU----CuuUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 27462 0.66 0.724815
Target:  5'- gCCGCGcacguucagcgccgCCCCGGCGcGGAgggcgcagucGCCCaCGAGc -3'
miRNA:   3'- gGGCGCa-------------GGGGCCGU-CUU----------UGGG-GCUC- -5'
21476 3' -60.8 NC_004812.1 + 3300 0.66 0.730446
Target:  5'- aCCgCGCGUCcaCCCGaGgAGGAGCcaggggaggggCCCGAGg -3'
miRNA:   3'- -GG-GCGCAG--GGGC-CgUCUUUG-----------GGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 22864 0.66 0.739769
Target:  5'- -aCGCGUCCgCGGCcucuuauGGCCCCGc- -3'
miRNA:   3'- ggGCGCAGGgGCCGucu----UUGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 45639 0.66 0.730446
Target:  5'- gCCGCGcugCCCgCGGCGauagcGAGuCCCgCGAGg -3'
miRNA:   3'- gGGCGCa--GGG-GCCGU-----CUUuGGG-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.