miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 3' -60.8 NC_004812.1 + 72886 1.1 0.00111
Target:  5'- gCCCGCGUCCCCGGCAGAAACCCCGAGg -3'
miRNA:   3'- -GGGCGCAGGGGCCGUCUUUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 22658 0.88 0.036951
Target:  5'- uCCCGCGUgCCcggggCCGGCGGGAGCCCCGAGc -3'
miRNA:   3'- -GGGCGCA-GG-----GGCCGUCUUUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 151211 0.82 0.102954
Target:  5'- gCCGCGUCCCUGG--GAGACCCCGAc -3'
miRNA:   3'- gGGCGCAGGGGCCguCUUUGGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 120310 0.82 0.102954
Target:  5'- gCCGCGUCCCUGG--GAGACCCCGAc -3'
miRNA:   3'- gGGCGCAGGGGCCguCUUUGGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 44714 0.82 0.102954
Target:  5'- aCCGCuUUCCCGGCGGGggUCCCGGGa -3'
miRNA:   3'- gGGCGcAGGGGCCGUCUuuGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 34254 0.82 0.105302
Target:  5'- cCCCGCG-CCCCGGCccccgccGGGAACCCCGc- -3'
miRNA:   3'- -GGGCGCaGGGGCCG-------UCUUUGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 3353 0.82 0.105302
Target:  5'- cCCCGCG-CCCCGGCccccgccGGGAACCCCGc- -3'
miRNA:   3'- -GGGCGCaGGGGCCG-------UCUUUGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 118093 0.81 0.11098
Target:  5'- gCCgCGCGUCUCCGGCGcGAccuccGACCCCGGGc -3'
miRNA:   3'- -GG-GCGCAGGGGCCGU-CU-----UUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 148994 0.81 0.11098
Target:  5'- gCCgCGCGUCUCCGGCGcGAccuccGACCCCGGGc -3'
miRNA:   3'- -GG-GCGCAGGGGCCGU-CU-----UUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 4090 0.81 0.116653
Target:  5'- cCCCGCGgCCCCGGCGGGGccguccuCCCCGGc -3'
miRNA:   3'- -GGGCGCaGGGGCCGUCUUu------GGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 129599 0.81 0.116653
Target:  5'- cCCCGCGgCCCCGGCGGGGccguccuCCCCGGc -3'
miRNA:   3'- -GGGCGCaGGGGCCGUCUUu------GGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 89369 0.8 0.125671
Target:  5'- gCCGCaGUCCCCGGCGGcucCCUCGAGa -3'
miRNA:   3'- gGGCG-CAGGGGCCGUCuuuGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 8852 0.8 0.128817
Target:  5'- cCCCGCGUCCC--GCGGGAGCCCCGc- -3'
miRNA:   3'- -GGGCGCAGGGgcCGUCUUUGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 151522 0.8 0.142145
Target:  5'- cCCCGCcUCCCCGGCc-GGACCCCGGc -3'
miRNA:   3'- -GGGCGcAGGGGCCGucUUUGGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 120621 0.8 0.142146
Target:  5'- cCCCGCcUCCCCGGCc-GGACCCCGGc -3'
miRNA:   3'- -GGGCGcAGGGGCCGucUUUGGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 85062 0.79 0.156724
Target:  5'- gCCGCGUgcgCCCCGGCguacgacgccagGGAGGCCgCCGAGg -3'
miRNA:   3'- gGGCGCA---GGGGCCG------------UCUUUGG-GGCUC- -5'
21476 3' -60.8 NC_004812.1 + 126222 0.78 0.168532
Target:  5'- gCCGCGcCCCCGGaGGAGAgCCCCGAc -3'
miRNA:   3'- gGGCGCaGGGGCCgUCUUU-GGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 24072 0.78 0.18113
Target:  5'- cCUCGCGUCCCCGGgGGAAauguGCgCCGAc -3'
miRNA:   3'- -GGGCGCAGGGGCCgUCUU----UGgGGCUc -5'
21476 3' -60.8 NC_004812.1 + 149581 0.78 0.181131
Target:  5'- cCUCGCGUCCCCGGgGGAAauguGCgCCGAc -3'
miRNA:   3'- -GGGCGCAGGGGCCgUCUU----UGgGGCUc -5'
21476 3' -60.8 NC_004812.1 + 119345 0.78 0.183748
Target:  5'- gCCCGCGUCCCUGGCGGGcggcgcgccugccGCCCCc-- -3'
miRNA:   3'- -GGGCGCAGGGGCCGUCUu------------UGGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.