miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 3' -60.8 NC_004812.1 + 76 0.68 0.65375
Target:  5'- uCCCGgGcgggcUCCCgGGCGGGcucccGGCCCCGc- -3'
miRNA:   3'- -GGGCgC-----AGGGgCCGUCU-----UUGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 195 0.69 0.595343
Target:  5'- gCgCGCG-CCgCCGGgGGAGGgCCCGGGu -3'
miRNA:   3'- -GgGCGCaGG-GGCCgUCUUUgGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 221 0.66 0.730446
Target:  5'- gUCGCGcagCCCCGGCccccGcgGCCCCGc- -3'
miRNA:   3'- gGGCGCa--GGGGCCGu---CuuUGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 476 0.68 0.624523
Target:  5'- cCCCGCGUCCgCgCGGCccGucACCCCu-- -3'
miRNA:   3'- -GGGCGCAGG-G-GCCGu-CuuUGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 513 0.68 0.634269
Target:  5'- cCCCG-GUCCCC-GCuGucucccGCCCCGGGa -3'
miRNA:   3'- -GGGCgCAGGGGcCGuCuu----UGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 549 0.69 0.565422
Target:  5'- uCCCGCcucccgCCCCGGCGcgcgcggccgcguGGAGCCgCGGGc -3'
miRNA:   3'- -GGGCGca----GGGGCCGU-------------CUUUGGgGCUC- -5'
21476 3' -60.8 NC_004812.1 + 571 0.75 0.263115
Target:  5'- gCCCGCccGUCCCgCGGCGcGGcccccGGCCCCGGGc -3'
miRNA:   3'- -GGGCG--CAGGG-GCCGU-CU-----UUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 616 0.72 0.429685
Target:  5'- cCCCGCG-CCgCGagcacGCGGGcugcAACCCCGAGg -3'
miRNA:   3'- -GGGCGCaGGgGC-----CGUCU----UUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 689 0.69 0.576001
Target:  5'- uCCCGCGgcccggccUCCUCGGCGcGgcAgCCCGGGc -3'
miRNA:   3'- -GGGCGC--------AGGGGCCGU-CuuUgGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 690 0.71 0.482281
Target:  5'- -gCGCGUCCCCGGguccGGAGCUCCGu- -3'
miRNA:   3'- ggGCGCAGGGGCCgu--CUUUGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 806 0.7 0.519015
Target:  5'- cCCCGcCGcCgCCCGGcCGGGggUCCUGGGg -3'
miRNA:   3'- -GGGC-GCaG-GGGCC-GUCUuuGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 851 0.7 0.509722
Target:  5'- cCCCGCGcgugUCCCC-GCGGccgcGAGCCCCGc- -3'
miRNA:   3'- -GGGCGC----AGGGGcCGUC----UUUGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 942 0.69 0.566382
Target:  5'- gCCGCGcgCuCCCGGCuguGGAGGCCuaGGGg -3'
miRNA:   3'- gGGCGCa-G-GGGCCG---UCUUUGGggCUC- -5'
21476 3' -60.8 NC_004812.1 + 1139 0.69 0.595343
Target:  5'- gCCGCcaggcUCCCCGGCGGcgcGAgCCCGGc -3'
miRNA:   3'- gGGCGc----AGGGGCCGUCu--UUgGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 1288 0.7 0.537795
Target:  5'- cCCCaGgGUCCCCggaGGCGGGgcgccGAcCCCCGGGc -3'
miRNA:   3'- -GGG-CgCAGGGG---CCGUCU-----UU-GGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 1474 0.72 0.404683
Target:  5'- gCCgGCGUCCUCGGCGGGcggcggcggAGCgCCGGc -3'
miRNA:   3'- -GGgCGCAGGGGCCGUCU---------UUGgGGCUc -5'
21476 3' -60.8 NC_004812.1 + 1570 0.66 0.739769
Target:  5'- cCCCGgGUUCCCGGaAG-AGCCCUc-- -3'
miRNA:   3'- -GGGCgCAGGGGCCgUCuUUGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 1579 0.66 0.721046
Target:  5'- gCCCGgGUCCCCcccGCAcGGcuCCCCGc- -3'
miRNA:   3'- -GGGCgCAGGGGc--CGU-CUuuGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 1678 0.66 0.730446
Target:  5'- cCCCGCGUCcgccuCCCGaaaGCGGAc-CCCCGc- -3'
miRNA:   3'- -GGGCGCAG-----GGGC---CGUCUuuGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 1680 0.68 0.624524
Target:  5'- gCCGCGgcccgCCCgCGGCGGGGgauGCCCUa-- -3'
miRNA:   3'- gGGCGCa----GGG-GCCGUCUU---UGGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.