miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 3' -60.8 NC_004812.1 + 126079 0.75 0.263115
Target:  5'- gCCCGCccGUCCCgCGGCGcGGcccccGGCCCCGGGc -3'
miRNA:   3'- -GGGCG--CAGGG-GCCGU-CU-----UUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 123404 0.77 0.199221
Target:  5'- gCCCcCGUCCUCcGCGGAGAcCCCCGAGa -3'
miRNA:   3'- -GGGcGCAGGGGcCGUCUUU-GGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 146143 0.76 0.224029
Target:  5'- cCCCGCGguccccaCCCGGCAuGGAACCCCu-- -3'
miRNA:   3'- -GGGCGCag-----GGGCCGU-CUUUGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 35004 0.76 0.229295
Target:  5'- aCCGCGUUgaggucggcgagCUCGGCGGggGCCCgGGGg -3'
miRNA:   3'- gGGCGCAG------------GGGCCGUCuuUGGGgCUC- -5'
21476 3' -60.8 NC_004812.1 + 76200 0.76 0.229295
Target:  5'- -aCGgGUCCCCGGCGGAGcCCUCGGc -3'
miRNA:   3'- ggGCgCAGGGGCCGUCUUuGGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 61427 0.76 0.245723
Target:  5'- aCCCGCGcgCCCCGGCcgucugAGGGcCCgCCGAGa -3'
miRNA:   3'- -GGGCGCa-GGGGCCG------UCUUuGG-GGCUC- -5'
21476 3' -60.8 NC_004812.1 + 84317 0.76 0.251412
Target:  5'- gCCGCGUCgCCGG-GGAGcGCCCCGGGc -3'
miRNA:   3'- gGGCGCAGgGGCCgUCUU-UGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 65434 0.75 0.257209
Target:  5'- gCCCGCGUCCCUcgGGgAGggGuccCCCCGGc -3'
miRNA:   3'- -GGGCGCAGGGG--CCgUCuuU---GGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 38190 0.75 0.257209
Target:  5'- aCCCGCGggCCCGGCAGGuccacauccgcGACCCCc-- -3'
miRNA:   3'- -GGGCGCagGGGCCGUCU-----------UUGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 90956 0.78 0.189987
Target:  5'- uCCCGCGgggCUCCGGUAGggGCUCCa-- -3'
miRNA:   3'- -GGGCGCa--GGGGCCGUCuuUGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 8095 0.78 0.189084
Target:  5'- gCCCGCGccgcccccccucCCCCGGCccGGAACCCCGAa -3'
miRNA:   3'- -GGGCGCa-----------GGGGCCGu-CUUUGGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 119345 0.78 0.183748
Target:  5'- gCCCGCGUCCCUGGCGGGcggcgcgccugccGCCCCc-- -3'
miRNA:   3'- -GGGCGCAGGGGCCGUCUu------------UGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 44714 0.82 0.102954
Target:  5'- aCCGCuUUCCCGGCGGGggUCCCGGGa -3'
miRNA:   3'- gGGCGcAGGGGCCGUCUuuGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 3353 0.82 0.105302
Target:  5'- cCCCGCG-CCCCGGCccccgccGGGAACCCCGc- -3'
miRNA:   3'- -GGGCGCaGGGGCCG-------UCUUUGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 118093 0.81 0.11098
Target:  5'- gCCgCGCGUCUCCGGCGcGAccuccGACCCCGGGc -3'
miRNA:   3'- -GG-GCGCAGGGGCCGU-CU-----UUGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 129599 0.81 0.116653
Target:  5'- cCCCGCGgCCCCGGCGGGGccguccuCCCCGGc -3'
miRNA:   3'- -GGGCGCaGGGGCCGUCUUu------GGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 89369 0.8 0.125671
Target:  5'- gCCGCaGUCCCCGGCGGcucCCUCGAGa -3'
miRNA:   3'- gGGCG-CAGGGGCCGUCuuuGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 120621 0.8 0.142146
Target:  5'- cCCCGCcUCCCCGGCc-GGACCCCGGc -3'
miRNA:   3'- -GGGCGcAGGGGCCGucUUUGGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 85062 0.79 0.156724
Target:  5'- gCCGCGUgcgCCCCGGCguacgacgccagGGAGGCCgCCGAGg -3'
miRNA:   3'- gGGCGCA---GGGGCCG------------UCUUUGG-GGCUC- -5'
21476 3' -60.8 NC_004812.1 + 149581 0.78 0.181131
Target:  5'- cCUCGCGUCCCCGGgGGAAauguGCgCCGAc -3'
miRNA:   3'- -GGGCGCAGGGGCCgUCUU----UGgGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.