miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 5' -57.8 NC_004812.1 + 17539 0.66 0.830974
Target:  5'- aGGGGcgacgGUCGGGGCggaCGCUGGgCUc-- -3'
miRNA:   3'- -CCCUa----CAGCCCUGa--GCGGCCgGAuau -5'
21479 5' -57.8 NC_004812.1 + 125326 0.66 0.862432
Target:  5'- gGGGcgGggcgccgCGGGAUgCGCCGGCg---- -3'
miRNA:   3'- -CCCuaCa------GCCCUGaGCGGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 25354 0.66 0.862432
Target:  5'- uGGGcgG-CGaccacGGGCUCGCCGGCg---- -3'
miRNA:   3'- -CCCuaCaGC-----CCUGAGCGGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 96030 0.66 0.861683
Target:  5'- cGGGAccUGgacgCGGGugcgcauGCUcCGCCGGCCc--- -3'
miRNA:   3'- -CCCU--ACa---GCCC-------UGA-GCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 135133 0.66 0.855621
Target:  5'- uGGGGUGuUUGGGGaggacgaaugagaugUCGCgGGCCUGc- -3'
miRNA:   3'- -CCCUAC-AGCCCUg--------------AGCGgCCGGAUau -5'
21479 5' -57.8 NC_004812.1 + 57496 0.66 0.822653
Target:  5'- ---cUG-CGGGucCUgGCCGGCCUGUGg -3'
miRNA:   3'- cccuACaGCCCu-GAgCGGCCGGAUAU- -5'
21479 5' -57.8 NC_004812.1 + 77722 0.66 0.854854
Target:  5'- cGGAUGgccUCGGGGCUCagggggugggGgCGGCCUc-- -3'
miRNA:   3'- cCCUAC---AGCCCUGAG----------CgGCCGGAuau -5'
21479 5' -57.8 NC_004812.1 + 130753 0.66 0.830974
Target:  5'- cGGccGUCGGGGCgCGCCgagucGGCCg--- -3'
miRNA:   3'- cCCuaCAGCCCUGaGCGG-----CCGGauau -5'
21479 5' -57.8 NC_004812.1 + 101869 0.66 0.847081
Target:  5'- gGGGAUG-CGGccccgCGCCGGCCc--- -3'
miRNA:   3'- -CCCUACaGCCcuga-GCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 44196 0.66 0.854854
Target:  5'- cGGGGg--UGGGGCUCGgCGGCg---- -3'
miRNA:   3'- -CCCUacaGCCCUGAGCgGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 156227 0.66 0.862432
Target:  5'- gGGGcgGggcgccgCGGGAUgCGCCGGCg---- -3'
miRNA:   3'- -CCCuaCa------GCCCUGaGCGGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 23239 0.66 0.822654
Target:  5'- gGGGGUGcugagCGGGACcuaccugCGCCagguccacGGCCUGa- -3'
miRNA:   3'- -CCCUACa----GCCCUGa------GCGG--------CCGGAUau -5'
21479 5' -57.8 NC_004812.1 + 82803 0.66 0.847081
Target:  5'- uGGGGUGggagcgCGGGGCgccggCGCCcGCCc--- -3'
miRNA:   3'- -CCCUACa-----GCCCUGa----GCGGcCGGauau -5'
21479 5' -57.8 NC_004812.1 + 5245 0.66 0.830974
Target:  5'- cGGccGUCGGGGCgcgccgaGUCGGCCg--- -3'
miRNA:   3'- cCCuaCAGCCCUGag-----CGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 43535 0.66 0.830974
Target:  5'- cGGcGGUGUCGcGGCUCGCugccgccgCGGCCg--- -3'
miRNA:   3'- -CC-CUACAGCcCUGAGCG--------GCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 140626 0.67 0.76948
Target:  5'- cGGGGccgcgggGUCGGcGC-CGCCGGCCg--- -3'
miRNA:   3'- -CCCUa------CAGCCcUGaGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 130905 0.67 0.796715
Target:  5'- cGGGGccg-GGGGCgUCGCCGGCCc--- -3'
miRNA:   3'- -CCCUacagCCCUG-AGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 106065 0.67 0.796715
Target:  5'- aGGGAgacUGgcgcgUGGGugUCGC-GGCCUGc- -3'
miRNA:   3'- -CCCU---ACa----GCCCugAGCGgCCGGAUau -5'
21479 5' -57.8 NC_004812.1 + 68577 0.67 0.78777
Target:  5'- cGGGAca--GGGACagGCCGGCCc--- -3'
miRNA:   3'- -CCCUacagCCCUGagCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 25393 0.67 0.778689
Target:  5'- gGGGAgGUCGGcGcGCUCGCCGGagaCCg--- -3'
miRNA:   3'- -CCCUaCAGCC-C-UGAGCGGCC---GGauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.