Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21479 | 5' | -57.8 | NC_004812.1 | + | 72333 | 1.08 | 0.002216 |
Target: 5'- gGGGAUGUCGGGACUCGCCGGCCUAUAa -3' miRNA: 3'- -CCCUACAGCCCUGAGCGGCCGGAUAU- -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 35558 | 0.77 | 0.290655 |
Target: 5'- cGGGGa---GGGGCUCGCCGGCCg--- -3' miRNA: 3'- -CCCUacagCCCUGAGCGGCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 4657 | 0.77 | 0.290655 |
Target: 5'- cGGGGa---GGGGCUCGCCGGCCg--- -3' miRNA: 3'- -CCCUacagCCCUGAGCGGCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 133935 | 0.74 | 0.42142 |
Target: 5'- cGGGGUccgcUCGGGGCUccCGCCGGCCc--- -3' miRNA: 3'- -CCCUAc---AGCCCUGA--GCGGCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 145350 | 0.71 | 0.542206 |
Target: 5'- gGGGcgGccgUGGGGCUggccguUGCCGGCCUGUc -3' miRNA: 3'- -CCCuaCa--GCCCUGA------GCGGCCGGAUAu -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 138464 | 0.71 | 0.542206 |
Target: 5'- gGGGGcUGUCGGGGCggggCGCCGcCCUc-- -3' miRNA: 3'- -CCCU-ACAGCCCUGa---GCGGCcGGAuau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 30222 | 0.71 | 0.543186 |
Target: 5'- gGGGGUGgggggcgcgcgcgggCGGGGCUCGC-GGCCg--- -3' miRNA: 3'- -CCCUACa--------------GCCCUGAGCGgCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 155730 | 0.71 | 0.543187 |
Target: 5'- gGGGGUGgggggcgcgcgcgggCGGGGCUCGC-GGCCg--- -3' miRNA: 3'- -CCCUACa--------------GCCCUGAGCGgCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 64206 | 0.71 | 0.552036 |
Target: 5'- gGGGGUGUCGGG-CggcCCGGCCg--- -3' miRNA: 3'- -CCCUACAGCCCuGagcGGCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 26226 | 0.71 | 0.57185 |
Target: 5'- uGGGAgg-CGGGACUCgagggGCCGGUCUc-- -3' miRNA: 3'- -CCCUacaGCCCUGAG-----CGGCCGGAuau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 84359 | 0.7 | 0.601865 |
Target: 5'- cGGGGUG-CGGuGGCggGCCGGCCc--- -3' miRNA: 3'- -CCCUACaGCC-CUGagCGGCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 26339 | 0.7 | 0.642153 |
Target: 5'- gGGGGUccCGGGGgUgGCCGGCCg--- -3' miRNA: 3'- -CCCUAcaGCCCUgAgCGGCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 94529 | 0.7 | 0.652225 |
Target: 5'- gGGGAccUCGGGGC-CGCCGcCCUGUc -3' miRNA: 3'- -CCCUacAGCCCUGaGCGGCcGGAUAu -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 66648 | 0.7 | 0.652225 |
Target: 5'- cGGGAggcgcGUCGGGaggcgcgccgccGCUCGCgGGCCc--- -3' miRNA: 3'- -CCCUa----CAGCCC------------UGAGCGgCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 1990 | 0.69 | 0.682315 |
Target: 5'- aGGGGUGgCGGGuCcCGCCGGCg---- -3' miRNA: 3'- -CCCUACaGCCCuGaGCGGCCGgauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 127498 | 0.69 | 0.682315 |
Target: 5'- aGGGGUGggCGGGuCcCGCCGGCg---- -3' miRNA: 3'- -CCCUACa-GCCCuGaGCGGCCGgauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 76977 | 0.69 | 0.692276 |
Target: 5'- cGGGc---CGGGGC-CGCCGGCCa--- -3' miRNA: 3'- -CCCuacaGCCCUGaGCGGCCGGauau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 91094 | 0.69 | 0.692276 |
Target: 5'- uGGcc-UC-GGACUCGCCGGCCUGc- -3' miRNA: 3'- cCCuacAGcCCUGAGCGGCCGGAUau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 152943 | 0.69 | 0.712043 |
Target: 5'- cGGGAcuUGggcgccgggCGGGACUugggCGCCGGgCCUGg- -3' miRNA: 3'- -CCCU--ACa--------GCCCUGA----GCGGCC-GGAUau -5' |
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21479 | 5' | -57.8 | NC_004812.1 | + | 122042 | 0.69 | 0.712043 |
Target: 5'- cGGGAcuUGggcgccgggCGGGACUugggCGCCGGgCCUGg- -3' miRNA: 3'- -CCCU--ACa--------GCCCUGA----GCGGCC-GGAUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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