miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 5' -57.8 NC_004812.1 + 83238 0.67 0.76948
Target:  5'- cGGGAUGggggacaccgGGGGCgaggCGUCGGCCg--- -3'
miRNA:   3'- -CCCUACag--------CCCUGa---GCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 78717 0.68 0.721832
Target:  5'- gGGGGUcggccggcugggGUCGGGGgUCgGCCGGCUg--- -3'
miRNA:   3'- -CCCUA------------CAGCCCUgAG-CGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 78795 0.68 0.721832
Target:  5'- gGGGGUcggccggcugggGUCGGGGgUCgGCCGGCUg--- -3'
miRNA:   3'- -CCCUA------------CAGCCCUgAG-CGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 47112 0.68 0.721832
Target:  5'- cGGGUGUgCGGGACgcuGCUGGCgCUGc- -3'
miRNA:   3'- cCCUACA-GCCCUGag-CGGCCG-GAUau -5'
21479 5' -57.8 NC_004812.1 + 107447 0.68 0.741177
Target:  5'- cGGccGUCGcGGACUCGCC-GCCg--- -3'
miRNA:   3'- cCCuaCAGC-CCUGAGCGGcCGGauau -5'
21479 5' -57.8 NC_004812.1 + 101995 0.68 0.750716
Target:  5'- cGGGggGUCGcGcGACUCGCgGcGCCg--- -3'
miRNA:   3'- -CCCuaCAGC-C-CUGAGCGgC-CGGauau -5'
21479 5' -57.8 NC_004812.1 + 83345 0.68 0.760153
Target:  5'- cGGuGAcgcacUGUCGGGuCcgCGCCGGCCc--- -3'
miRNA:   3'- -CC-CU-----ACAGCCCuGa-GCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 17599 0.68 0.760153
Target:  5'- uGGgcGUCGgaGGACUuccgCGCCGGCCUc-- -3'
miRNA:   3'- cCCuaCAGC--CCUGA----GCGGCCGGAuau -5'
21479 5' -57.8 NC_004812.1 + 77954 0.68 0.763898
Target:  5'- cGGGGUGgcgggggcgaagaGGGugUCcggGCCGGCCUu-- -3'
miRNA:   3'- -CCCUACag-----------CCCugAG---CGGCCGGAuau -5'
21479 5' -57.8 NC_004812.1 + 122042 0.69 0.712043
Target:  5'- cGGGAcuUGggcgccgggCGGGACUugggCGCCGGgCCUGg- -3'
miRNA:   3'- -CCCU--ACa--------GCCCUGA----GCGGCC-GGAUau -5'
21479 5' -57.8 NC_004812.1 + 127498 0.69 0.682315
Target:  5'- aGGGGUGggCGGGuCcCGCCGGCg---- -3'
miRNA:   3'- -CCCUACa-GCCCuGaGCGGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 94529 0.7 0.652225
Target:  5'- gGGGAccUCGGGGC-CGCCGcCCUGUc -3'
miRNA:   3'- -CCCUacAGCCCUGaGCGGCcGGAUAu -5'
21479 5' -57.8 NC_004812.1 + 133935 0.74 0.42142
Target:  5'- cGGGGUccgcUCGGGGCUccCGCCGGCCc--- -3'
miRNA:   3'- -CCCUAc---AGCCCUGA--GCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 138464 0.71 0.542206
Target:  5'- gGGGGcUGUCGGGGCggggCGCCGcCCUc-- -3'
miRNA:   3'- -CCCU-ACAGCCCUGa---GCGGCcGGAuau -5'
21479 5' -57.8 NC_004812.1 + 145350 0.71 0.542206
Target:  5'- gGGGcgGccgUGGGGCUggccguUGCCGGCCUGUc -3'
miRNA:   3'- -CCCuaCa--GCCCUGA------GCGGCCGGAUAu -5'
21479 5' -57.8 NC_004812.1 + 155730 0.71 0.543187
Target:  5'- gGGGGUGgggggcgcgcgcgggCGGGGCUCGC-GGCCg--- -3'
miRNA:   3'- -CCCUACa--------------GCCCUGAGCGgCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 26226 0.71 0.57185
Target:  5'- uGGGAgg-CGGGACUCgagggGCCGGUCUc-- -3'
miRNA:   3'- -CCCUacaGCCCUGAG-----CGGCCGGAuau -5'
21479 5' -57.8 NC_004812.1 + 84359 0.7 0.601865
Target:  5'- cGGGGUG-CGGuGGCggGCCGGCCc--- -3'
miRNA:   3'- -CCCUACaGCC-CUGagCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 26339 0.7 0.642153
Target:  5'- gGGGGUccCGGGGgUgGCCGGCCg--- -3'
miRNA:   3'- -CCCUAcaGCCCUgAgCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 66648 0.7 0.652225
Target:  5'- cGGGAggcgcGUCGGGaggcgcgccgccGCUCGCgGGCCc--- -3'
miRNA:   3'- -CCCUa----CAGCCC------------UGAGCGgCCGGauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.