miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 5' -57.8 NC_004812.1 + 1990 0.69 0.682315
Target:  5'- aGGGGUGgCGGGuCcCGCCGGCg---- -3'
miRNA:   3'- -CCCUACaGCCCuGaGCGGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 2140 0.67 0.810724
Target:  5'- gGGGAggccccgcgggCGGGGCUCGCggcggCGGCCa--- -3'
miRNA:   3'- -CCCUaca--------GCCCUGAGCG-----GCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 4657 0.77 0.290655
Target:  5'- cGGGGa---GGGGCUCGCCGGCCg--- -3'
miRNA:   3'- -CCCUacagCCCUGAGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 5245 0.66 0.830974
Target:  5'- cGGccGUCGGGGCgcgccgaGUCGGCCg--- -3'
miRNA:   3'- cCCuaCAGCCCUGag-----CGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 5394 0.67 0.796715
Target:  5'- aGGGggGUCGGGGuCUCccagggacgcgGCgGGCCg--- -3'
miRNA:   3'- -CCCuaCAGCCCU-GAG-----------CGgCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 5397 0.67 0.796715
Target:  5'- cGGGGccg-GGGGCgUCGCCGGCCc--- -3'
miRNA:   3'- -CCCUacagCCCUG-AGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 17539 0.66 0.830974
Target:  5'- aGGGGcgacgGUCGGGGCggaCGCUGGgCUc-- -3'
miRNA:   3'- -CCCUa----CAGCCCUGa--GCGGCCgGAuau -5'
21479 5' -57.8 NC_004812.1 + 17599 0.68 0.760153
Target:  5'- uGGgcGUCGgaGGACUuccgCGCCGGCCUc-- -3'
miRNA:   3'- cCCuaCAGC--CCUGA----GCGGCCGGAuau -5'
21479 5' -57.8 NC_004812.1 + 23239 0.66 0.822654
Target:  5'- gGGGGUGcugagCGGGACcuaccugCGCCagguccacGGCCUGa- -3'
miRNA:   3'- -CCCUACa----GCCCUGa------GCGG--------CCGGAUau -5'
21479 5' -57.8 NC_004812.1 + 25354 0.66 0.862432
Target:  5'- uGGGcgG-CGaccacGGGCUCGCCGGCg---- -3'
miRNA:   3'- -CCCuaCaGC-----CCUGAGCGGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 25393 0.67 0.778689
Target:  5'- gGGGAgGUCGGcGcGCUCGCCGGagaCCg--- -3'
miRNA:   3'- -CCCUaCAGCC-C-UGAGCGGCC---GGauau -5'
21479 5' -57.8 NC_004812.1 + 26226 0.71 0.57185
Target:  5'- uGGGAgg-CGGGACUCgagggGCCGGUCUc-- -3'
miRNA:   3'- -CCCUacaGCCCUGAG-----CGGCCGGAuau -5'
21479 5' -57.8 NC_004812.1 + 26339 0.7 0.642153
Target:  5'- gGGGGUccCGGGGgUgGCCGGCCg--- -3'
miRNA:   3'- -CCCUAcaGCCCUgAgCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 30222 0.71 0.543186
Target:  5'- gGGGGUGgggggcgcgcgcgggCGGGGCUCGC-GGCCg--- -3'
miRNA:   3'- -CCCUACa--------------GCCCUGAGCGgCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 35558 0.77 0.290655
Target:  5'- cGGGGa---GGGGCUCGCCGGCCg--- -3'
miRNA:   3'- -CCCUacagCCCUGAGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 36295 0.67 0.796715
Target:  5'- aGGGggGUCGGGGuCUCccagggacgcgGCgGGCCg--- -3'
miRNA:   3'- -CCCuaCAGCCCU-GAG-----------CGgCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 43535 0.66 0.830974
Target:  5'- cGGcGGUGUCGcGGCUCGCugccgccgCGGCCg--- -3'
miRNA:   3'- -CC-CUACAGCcCUGAGCG--------GCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 44196 0.66 0.854854
Target:  5'- cGGGGg--UGGGGCUCGgCGGCg---- -3'
miRNA:   3'- -CCCUacaGCCCUGAGCgGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 47112 0.68 0.721832
Target:  5'- cGGGUGUgCGGGACgcuGCUGGCgCUGc- -3'
miRNA:   3'- cCCUACA-GCCCUGag-CGGCCG-GAUau -5'
21479 5' -57.8 NC_004812.1 + 57496 0.66 0.822653
Target:  5'- ---cUG-CGGGucCUgGCCGGCCUGUGg -3'
miRNA:   3'- cccuACaGCCCu-GAgCGGCCGGAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.