miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 5' -52.8 NC_004812.1 + 65095 0.66 0.966538
Target:  5'- ---cGCG-CGCCccGCGGAGGAGuGGCu -3'
miRNA:   3'- uucuUGCuGCGGu-UGUCUCCUCuCUG- -5'
21482 5' -52.8 NC_004812.1 + 75590 0.66 0.969387
Target:  5'- gAAGAACGGCacguaguGCC-GCAG-GGAGGGcACg -3'
miRNA:   3'- -UUCUUGCUG-------CGGuUGUCuCCUCUC-UG- -5'
21482 5' -52.8 NC_004812.1 + 146789 0.66 0.972629
Target:  5'- -uGAACGGCcgaacacaGUCGAaggGGGGGAGGGACc -3'
miRNA:   3'- uuCUUGCUG--------CGGUUg--UCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 5041 0.66 0.966538
Target:  5'- cGGGGCaGCGCCGcggucACGGGGGcccgggcgGGAGACu -3'
miRNA:   3'- uUCUUGcUGCGGU-----UGUCUCC--------UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 32112 0.66 0.963159
Target:  5'- uGGGccAUGGCGCCcuGGCGGAGGccGGACg -3'
miRNA:   3'- uUCU--UGCUGCGG--UUGUCUCCucUCUG- -5'
21482 5' -52.8 NC_004812.1 + 148163 0.66 0.966538
Target:  5'- cAGGACGACG-CGGCGGuGGGAGcGGAa -3'
miRNA:   3'- uUCUUGCUGCgGUUGUC-UCCUC-UCUg -5'
21482 5' -52.8 NC_004812.1 + 68410 0.66 0.963159
Target:  5'- cGGGGccGCGGCucGCCccgcGGCcgAGAGGAGGGACg -3'
miRNA:   3'- -UUCU--UGCUG--CGG----UUG--UCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 121862 0.66 0.963159
Target:  5'- ---cGCGGCGaCCAcggcGCAGAGGGGcgGGGCc -3'
miRNA:   3'- uucuUGCUGC-GGU----UGUCUCCUC--UCUG- -5'
21482 5' -52.8 NC_004812.1 + 155552 0.66 0.972629
Target:  5'- cGGGAGgGGCGgggGAgGGGGGAGGGGCg -3'
miRNA:   3'- -UUCUUgCUGCgg-UUgUCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 80637 0.66 0.966538
Target:  5'- gGAGAGgGGCGgggaguCCGGCAGcGGGAGgAGGCu -3'
miRNA:   3'- -UUCUUgCUGC------GGUUGUC-UCCUC-UCUG- -5'
21482 5' -52.8 NC_004812.1 + 45122 0.66 0.972629
Target:  5'- cGGGGCGAUGUCccCAGAGGGGuccacgggGGGCc -3'
miRNA:   3'- uUCUUGCUGCGGuuGUCUCCUC--------UCUG- -5'
21482 5' -52.8 NC_004812.1 + 61380 0.66 0.966538
Target:  5'- aGAGGGCGGgG-CGGCGGGGuGAGGGAa -3'
miRNA:   3'- -UUCUUGCUgCgGUUGUCUC-CUCUCUg -5'
21482 5' -52.8 NC_004812.1 + 151930 0.66 0.966538
Target:  5'- uGGGGCG-CGCCGGaGGuGGAcGAGGCg -3'
miRNA:   3'- uUCUUGCuGCGGUUgUCuCCU-CUCUG- -5'
21482 5' -52.8 NC_004812.1 + 62037 0.66 0.966538
Target:  5'- cGAGAgACGGCgGgCGGCAGAGGcuGGGGCc -3'
miRNA:   3'- -UUCU-UGCUG-CgGUUGUCUCCu-CUCUG- -5'
21482 5' -52.8 NC_004812.1 + 106042 0.66 0.969693
Target:  5'- --cAACGGCGCgAcGCAGGGGuccgagGGAGACu -3'
miRNA:   3'- uucUUGCUGCGgU-UGUCUCC------UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 128947 0.66 0.963159
Target:  5'- ---cGCGGCGCCAgccgccGCGGGGGucGGGCc -3'
miRNA:   3'- uucuUGCUGCGGU------UGUCUCCucUCUG- -5'
21482 5' -52.8 NC_004812.1 + 99967 0.66 0.972629
Target:  5'- -cGGugGGCcguGCCGGCGGGGGccAGGCa -3'
miRNA:   3'- uuCUugCUG---CGGUUGUCUCCucUCUG- -5'
21482 5' -52.8 NC_004812.1 + 102262 0.66 0.963159
Target:  5'- uGGGGuCGGCGagGAgGGGGGAGGGAUg -3'
miRNA:   3'- -UUCUuGCUGCggUUgUCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 133888 0.66 0.969693
Target:  5'- gGAGAGCGAUugcucaucgGCCGugguaaccccggGCGGGGGGGAcGCg -3'
miRNA:   3'- -UUCUUGCUG---------CGGU------------UGUCUCCUCUcUG- -5'
21482 5' -52.8 NC_004812.1 + 75125 0.66 0.976387
Target:  5'- cGAGAGCGAcggggggcgcguguaCGCCGuCGucGGGGAGGCc -3'
miRNA:   3'- -UUCUUGCU---------------GCGGUuGUcuCCUCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.