miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 5' -52.8 NC_004812.1 + 728 0.74 0.627572
Target:  5'- cGGcGCGGuCGCCGGCGGGGGuGGGGGCg -3'
miRNA:   3'- uUCuUGCU-GCGGUUGUCUCC-UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 1216 0.67 0.942226
Target:  5'- cGGGGGCGGCGCCG-CGGGGGcuccuccccgcccGGGcGGCg -3'
miRNA:   3'- -UUCUUGCUGCGGUuGUCUCC-------------UCU-CUG- -5'
21482 5' -52.8 NC_004812.1 + 1420 0.66 0.972629
Target:  5'- --cGACGGCGgCcGCGG-GGAGGGGCc -3'
miRNA:   3'- uucUUGCUGCgGuUGUCuCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 2345 0.67 0.94728
Target:  5'- gGAGGACGGggggcgcgucccCGCCGGagAGAGGcGGGACg -3'
miRNA:   3'- -UUCUUGCU------------GCGGUUg-UCUCCuCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 3088 0.71 0.790722
Target:  5'- cGGGACGACGgCGugGgGGGGAGGGGa -3'
miRNA:   3'- uUCUUGCUGCgGUugU-CUCCUCUCUg -5'
21482 5' -52.8 NC_004812.1 + 3439 0.66 0.963159
Target:  5'- ---cGCGGCGCCAgccgccGCGGGGGucGGGCc -3'
miRNA:   3'- uucuUGCUGCGGU------UGUCUCCucUCUG- -5'
21482 5' -52.8 NC_004812.1 + 4118 0.67 0.942698
Target:  5'- ----cCGGCGCCGGCGGGgcccucgucGGAGAGGg -3'
miRNA:   3'- uucuuGCUGCGGUUGUCU---------CCUCUCUg -5'
21482 5' -52.8 NC_004812.1 + 4638 0.75 0.606455
Target:  5'- gGGGGGCggGACGCCcGCGcGGGGAGGGGCu -3'
miRNA:   3'- -UUCUUG--CUGCGGuUGU-CUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 4719 0.72 0.768709
Target:  5'- cGAGGACGGggcgugugcccgcuCGCCcgggaggaGACAGAGaGAGAGGCg -3'
miRNA:   3'- -UUCUUGCU--------------GCGG--------UUGUCUC-CUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 4951 0.7 0.852289
Target:  5'- gGAGGGCGGCcggcgggcgGCCGGCGGcGGcGAGGCg -3'
miRNA:   3'- -UUCUUGCUG---------CGGUUGUCuCCuCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 5041 0.66 0.966538
Target:  5'- cGGGGCaGCGCCGcggucACGGGGGcccgggcgGGAGACu -3'
miRNA:   3'- uUCUUGcUGCGGU-----UGUCUCC--------UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 6050 0.66 0.972629
Target:  5'- uAGGGCGGCGaggggaaggCGGCGGAGGcgaagGGGGGCg -3'
miRNA:   3'- uUCUUGCUGCg--------GUUGUCUCC-----UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 6112 0.7 0.852289
Target:  5'- cGGGGGCGACGgCGGCGGGcugccGGGGaAGGCg -3'
miRNA:   3'- -UUCUUGCUGCgGUUGUCU-----CCUC-UCUG- -5'
21482 5' -52.8 NC_004812.1 + 6301 0.72 0.731911
Target:  5'- gGGGAGCGGCGCCcccgggcacGCGGggggccccgggcAGGAGGGGCa -3'
miRNA:   3'- -UUCUUGCUGCGGu--------UGUC------------UCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 7457 0.67 0.941275
Target:  5'- gAAGGGCGGggggaaacuCGCCGuuucggcgagggggAUGGGGGGGGGACg -3'
miRNA:   3'- -UUCUUGCU---------GCGGU--------------UGUCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 7949 0.67 0.942698
Target:  5'- gGGGGGCG-CGuCCGGgGGGGGccgAGAGACg -3'
miRNA:   3'- -UUCUUGCuGC-GGUUgUCUCC---UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 8628 0.66 0.972629
Target:  5'- --aAugGACGCgAgggGCGGGGGAGcGGGCg -3'
miRNA:   3'- uucUugCUGCGgU---UGUCUCCUC-UCUG- -5'
21482 5' -52.8 NC_004812.1 + 8863 0.67 0.936366
Target:  5'- gGGGggUGGgGCgGgggaaagggaggagGCGGAGGAGGGAUg -3'
miRNA:   3'- -UUCuuGCUgCGgU--------------UGUCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 9256 0.66 0.975354
Target:  5'- gAAGGGCGACGCCccuccuucuCGGcGGAcGGGCa -3'
miRNA:   3'- -UUCUUGCUGCGGuu-------GUCuCCUcUCUG- -5'
21482 5' -52.8 NC_004812.1 + 9650 0.67 0.951614
Target:  5'- gGGGAAacucaGCGCCAcCGGGGaGGGGGACg -3'
miRNA:   3'- -UUCUUgc---UGCGGUuGUCUC-CUCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.