miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 5' -52.8 NC_004812.1 + 35751 0.72 0.771622
Target:  5'- ---uACaGCGCCAgcccccGCAGGGGGGAGGCg -3'
miRNA:   3'- uucuUGcUGCGGU------UGUCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 124043 0.73 0.721728
Target:  5'- cGGGccGCGGCGCCGcggccaACGGGGGAGcGGCg -3'
miRNA:   3'- uUCU--UGCUGCGGU------UGUCUCCUCuCUG- -5'
21482 5' -52.8 NC_004812.1 + 6301 0.72 0.731911
Target:  5'- gGGGAGCGGCGCCcccgggcacGCGGggggccccgggcAGGAGGGGCa -3'
miRNA:   3'- -UUCUUGCUGCGGu--------UGUC------------UCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 122283 0.72 0.740998
Target:  5'- gGGGGcgcgGCGGCGCCGgagggccGCcGGGGGGAGGCg -3'
miRNA:   3'- -UUCU----UGCUGCGGU-------UGuCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 99228 0.72 0.742003
Target:  5'- -cGAACG-CGUCGGCGGGGGcGGGGGCc -3'
miRNA:   3'- uuCUUGCuGCGGUUGUCUCC-UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 121632 0.72 0.751992
Target:  5'- cGGAgGCGGCgcgGCCGGCGGAGGAGGaGCg -3'
miRNA:   3'- uUCU-UGCUG---CGGUUGUCUCCUCUcUG- -5'
21482 5' -52.8 NC_004812.1 + 27800 0.72 0.751992
Target:  5'- aGAGGGCGGgGCCGGgGGGGGAGcggggguucgacGGGCg -3'
miRNA:   3'- -UUCUUGCUgCGGUUgUCUCCUC------------UCUG- -5'
21482 5' -52.8 NC_004812.1 + 36880 0.72 0.751992
Target:  5'- gGAGAAgugguUGGCGCCGAgGGucGGGGGGACg -3'
miRNA:   3'- -UUCUU-----GCUGCGGUUgUCu-CCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 4719 0.72 0.768709
Target:  5'- cGAGGACGGggcgugugcccgcuCGCCcgggaggaGACAGAGaGAGAGGCg -3'
miRNA:   3'- -UUCUUGCU--------------GCGG--------UUGUCUC-CUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 112986 0.73 0.721728
Target:  5'- uGGAucGCGGCGCCGcggccgccgagGCAGAGGAcGcAGACg -3'
miRNA:   3'- uUCU--UGCUGCGGU-----------UGUCUCCU-C-UCUG- -5'
21482 5' -52.8 NC_004812.1 + 155262 0.73 0.701125
Target:  5'- gGGGGGCgcggcgGACGCCAAaccGGGGAGGGGCg -3'
miRNA:   3'- -UUCUUG------CUGCGGUUgu-CUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 139638 0.73 0.690725
Target:  5'- gGGGGGCGGgGCCGAgAGAGGGGcAGGg -3'
miRNA:   3'- -UUCUUGCUgCGGUUgUCUCCUC-UCUg -5'
21482 5' -52.8 NC_004812.1 + 64082 0.77 0.473715
Target:  5'- gGAGGACGAUGCCGgggGCgaAGAGGcgGGAGACg -3'
miRNA:   3'- -UUCUUGCUGCGGU---UG--UCUCC--UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 11626 0.76 0.523397
Target:  5'- cGGGAGCGu--CCAGCGGAGGAGAcGACg -3'
miRNA:   3'- -UUCUUGCugcGGUUGUCUCCUCU-CUG- -5'
21482 5' -52.8 NC_004812.1 + 150833 0.75 0.585419
Target:  5'- gAGGAACGcCGCgAGCGGAcGGGGAGAg -3'
miRNA:   3'- -UUCUUGCuGCGgUUGUCU-CCUCUCUg -5'
21482 5' -52.8 NC_004812.1 + 70843 0.75 0.595922
Target:  5'- gAGGGACGACGCCcACAGGagacGcGGGGGGCg -3'
miRNA:   3'- -UUCUUGCUGCGGuUGUCU----C-CUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 4638 0.75 0.606455
Target:  5'- gGGGGGCggGACGCCcGCGcGGGGAGGGGCu -3'
miRNA:   3'- -UUCUUG--CUGCGGuUGU-CUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 728 0.74 0.627572
Target:  5'- cGGcGCGGuCGCCGGCGGGGGuGGGGGCg -3'
miRNA:   3'- uUCuUGCU-GCGGUUGUCUCC-UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 152517 0.74 0.648704
Target:  5'- gGAGGACGGCcccGCCGgggccGCGGGGGAG-GACg -3'
miRNA:   3'- -UUCUUGCUG---CGGU-----UGUCUCCUCuCUG- -5'
21482 5' -52.8 NC_004812.1 + 60931 0.74 0.66978
Target:  5'- uGGGACGGCGUgAGCuuGAGG-GAGACg -3'
miRNA:   3'- uUCUUGCUGCGgUUGu-CUCCuCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.