miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21482 5' -52.8 NC_004812.1 + 70659 1.07 0.00664
Target:  5'- cAAGAACGACGCCAACAGAGGAGAGACu -3'
miRNA:   3'- -UUCUUGCUGCGGUUGUCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 10146 0.79 0.39083
Target:  5'- aGGGAGCGAcagaCGgCGACGGGGGGGGGGCg -3'
miRNA:   3'- -UUCUUGCU----GCgGUUGUCUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 51571 0.79 0.39083
Target:  5'- cGGAGCGGCGCCucccaucGCGGAggccGGAGAGACc -3'
miRNA:   3'- uUCUUGCUGCGGu------UGUCU----CCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 64082 0.77 0.473715
Target:  5'- gGAGGACGAUGCCGgggGCgaAGAGGcgGGAGACg -3'
miRNA:   3'- -UUCUUGCUGCGGU---UG--UCUCC--UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 62390 0.77 0.48347
Target:  5'- --cGGCGACGCCGGC-GAGGAGcAGACc -3'
miRNA:   3'- uucUUGCUGCGGUUGuCUCCUC-UCUG- -5'
21482 5' -52.8 NC_004812.1 + 138316 0.77 0.49332
Target:  5'- gGAGggUGGCGCCGgcGCGGAGGAGGc-- -3'
miRNA:   3'- -UUCuuGCUGCGGU--UGUCUCCUCUcug -5'
21482 5' -52.8 NC_004812.1 + 11626 0.76 0.523397
Target:  5'- cGGGAGCGu--CCAGCGGAGGAGAcGACg -3'
miRNA:   3'- -UUCUUGCugcGGUUGUCUCCUCU-CUG- -5'
21482 5' -52.8 NC_004812.1 + 150833 0.75 0.585419
Target:  5'- gAGGAACGcCGCgAGCGGAcGGGGAGAg -3'
miRNA:   3'- -UUCUUGCuGCGgUUGUCU-CCUCUCUg -5'
21482 5' -52.8 NC_004812.1 + 25325 0.75 0.585419
Target:  5'- gAGGAACGcCGCgAGCGGAcGGGGAGAg -3'
miRNA:   3'- -UUCUUGCuGCGgUUGUCU-CCUCUCUg -5'
21482 5' -52.8 NC_004812.1 + 70843 0.75 0.595922
Target:  5'- gAGGGACGACGCCcACAGGagacGcGGGGGGCg -3'
miRNA:   3'- -UUCUUGCUGCGGuUGUCU----C-CUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 4638 0.75 0.606455
Target:  5'- gGGGGGCggGACGCCcGCGcGGGGAGGGGCu -3'
miRNA:   3'- -UUCUUG--CUGCGGuUGU-CUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 35539 0.75 0.606455
Target:  5'- gGGGGGCggGACGCCcGCGcGGGGAGGGGCu -3'
miRNA:   3'- -UUCUUG--CUGCGGuUGU-CUCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 45285 0.75 0.606455
Target:  5'- -cGGGCGACcccCCGACAGgaacAGGAGAGACu -3'
miRNA:   3'- uuCUUGCUGc--GGUUGUC----UCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 100858 0.75 0.617007
Target:  5'- cGAGGACGGgGCCGcgggggagGCGGGGGAG-GGCg -3'
miRNA:   3'- -UUCUUGCUgCGGU--------UGUCUCCUCuCUG- -5'
21482 5' -52.8 NC_004812.1 + 98840 0.74 0.627572
Target:  5'- -cGGGCGGCGCgGACGGcGGGGAGGu -3'
miRNA:   3'- uuCUUGCUGCGgUUGUCuCCUCUCUg -5'
21482 5' -52.8 NC_004812.1 + 31629 0.74 0.627572
Target:  5'- cGGcGCGGuCGCCGGCGGGGGuGGGGGCg -3'
miRNA:   3'- uUCuUGCU-GCGGUUGUCUCC-UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 728 0.74 0.627572
Target:  5'- cGGcGCGGuCGCCGGCGGGGGuGGGGGCg -3'
miRNA:   3'- uUCuUGCU-GCGGUUGUCUCC-UCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 49617 0.74 0.637084
Target:  5'- uGGGAGgGGCGCCcGCGGggcgggaGGGGGAGGCg -3'
miRNA:   3'- -UUCUUgCUGCGGuUGUC-------UCCUCUCUG- -5'
21482 5' -52.8 NC_004812.1 + 27008 0.74 0.648704
Target:  5'- gGAGGACGGCcccGCCGgggccGCGGGGGAG-GACg -3'
miRNA:   3'- -UUCUUGCUG---CGGU-----UGUCUCCUCuCUG- -5'
21482 5' -52.8 NC_004812.1 + 152517 0.74 0.648704
Target:  5'- gGAGGACGGCcccGCCGgggccGCGGGGGAG-GACg -3'
miRNA:   3'- -UUCUUGCUG---CGGU-----UGUCUCCUCuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.