miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 3' -60.1 NC_004812.1 + 43396 0.66 0.738301
Target:  5'- cUGCUGCUGCGuGuGGu-CGGAGuCGAc -3'
miRNA:   3'- aGCGACGGCGC-CuCCuuGCCUC-GCUc -5'
21483 3' -60.1 NC_004812.1 + 83227 0.66 0.728818
Target:  5'- -gGCUgGCCcaGCGGgaugGGGGACaccgGGGGCGAGg -3'
miRNA:   3'- agCGA-CGG--CGCC----UCCUUG----CCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 5047 0.66 0.747698
Target:  5'- -aGC-GCCGCGGucacGGGGGCccGGGCGGGa -3'
miRNA:   3'- agCGaCGGCGCC----UCCUUGc-CUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 73510 0.66 0.738301
Target:  5'- gCGCgUGCCGaacaGGAGGccgguGGCcgGGGGCGGGc -3'
miRNA:   3'- aGCG-ACGGCg---CCUCC-----UUG--CCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 28842 0.66 0.747698
Target:  5'- -aGCUGCgGgGGcGGGACuuugGGGGCGAc -3'
miRNA:   3'- agCGACGgCgCCuCCUUG----CCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 68217 0.66 0.738301
Target:  5'- gCGCgGCCGgcCGGGGGugcGCGGGGgcCGGGg -3'
miRNA:   3'- aGCGaCGGC--GCCUCCu--UGCCUC--GCUC- -5'
21483 3' -60.1 NC_004812.1 + 6176 0.66 0.738301
Target:  5'- -gGCggggguuggGUCGCGGAGGccCGGGGCGc- -3'
miRNA:   3'- agCGa--------CGGCGCCUCCuuGCCUCGCuc -5'
21483 3' -60.1 NC_004812.1 + 135541 0.66 0.747698
Target:  5'- -gGCcGCCGCGGAcucGGAccccggccacagGCGGGGCa-- -3'
miRNA:   3'- agCGaCGGCGCCU---CCU------------UGCCUCGcuc -5'
21483 3' -60.1 NC_004812.1 + 118310 0.66 0.775286
Target:  5'- cCGCUggGUgGCGGAGGGGCagaugacgccGGAGCa-- -3'
miRNA:   3'- aGCGA--CGgCGCCUCCUUG----------CCUCGcuc -5'
21483 3' -60.1 NC_004812.1 + 140870 0.66 0.738301
Target:  5'- gCGCgcaaGgCGCGG-GGGugGGuGGCGGGa -3'
miRNA:   3'- aGCGa---CgGCGCCuCCUugCC-UCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 148660 0.66 0.747698
Target:  5'- -gGgUG-CGCGGGGGAGgGGAggGCGAGn -3'
miRNA:   3'- agCgACgGCGCCUCCUUgCCU--CGCUC- -5'
21483 3' -60.1 NC_004812.1 + 65776 0.66 0.728818
Target:  5'- cCGC-GCCGCGGGcgccGGcgcuACGGAG-GAGg -3'
miRNA:   3'- aGCGaCGGCGCCU----CCu---UGCCUCgCUC- -5'
21483 3' -60.1 NC_004812.1 + 114691 0.66 0.738301
Target:  5'- gCGCgcccgggGCCGCGGGGGAguACGuGAuGCa-- -3'
miRNA:   3'- aGCGa------CGGCGCCUCCU--UGC-CU-CGcuc -5'
21483 3' -60.1 NC_004812.1 + 71968 0.66 0.732621
Target:  5'- aCGCgcGCCGCGGGaggcucacgcgccccGGGGCuGGGGCGcGg -3'
miRNA:   3'- aGCGa-CGGCGCCU---------------CCUUG-CCUCGCuC- -5'
21483 3' -60.1 NC_004812.1 + 45731 0.66 0.747698
Target:  5'- -gGcCUGCCGcCGGGcGGGcuccGCGGAGCccGAGg -3'
miRNA:   3'- agC-GACGGC-GCCU-CCU----UGCCUCG--CUC- -5'
21483 3' -60.1 NC_004812.1 + 53612 0.66 0.728818
Target:  5'- gUCGUgaagGUgGUGGAGaGGGCGGA-CGAGg -3'
miRNA:   3'- -AGCGa---CGgCGCCUC-CUUGCCUcGCUC- -5'
21483 3' -60.1 NC_004812.1 + 46287 0.66 0.74395
Target:  5'- gCGCggggcggccggagGCCGCGGcGGGccGCGcGGGCGAc -3'
miRNA:   3'- aGCGa------------CGGCGCCuCCU--UGC-CUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 30801 0.66 0.738301
Target:  5'- cCGCggGCCGagggccccaCGGGGGGGCaGGGCGGc -3'
miRNA:   3'- aGCGa-CGGC---------GCCUCCUUGcCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 53426 0.66 0.728818
Target:  5'- gCGUUGCUGaGGAGGGGCuGGuacGCGAu -3'
miRNA:   3'- aGCGACGGCgCCUCCUUG-CCu--CGCUc -5'
21483 3' -60.1 NC_004812.1 + 68427 0.66 0.738301
Target:  5'- cCGCgGCCGagaGGAGGGACGcccCGGGg -3'
miRNA:   3'- aGCGaCGGCg--CCUCCUUGCcucGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.