miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 3' -60.1 NC_004812.1 + 730 0.7 0.504757
Target:  5'- gCGCggucGCCgGCGG-GGGugGGGGCGGc -3'
miRNA:   3'- aGCGa---CGG-CGCCuCCUugCCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 1275 0.72 0.423941
Target:  5'- cCGCcgGCCGCGGGcGGGCGGucCGAGg -3'
miRNA:   3'- aGCGa-CGGCGCCUcCUUGCCucGCUC- -5'
21483 3' -60.1 NC_004812.1 + 1424 0.7 0.523633
Target:  5'- -gGCgGCCGCggGGAGGGGCcGGGgccGCGAGg -3'
miRNA:   3'- agCGaCGGCG--CCUCCUUG-CCU---CGCUC- -5'
21483 3' -60.1 NC_004812.1 + 1941 0.66 0.766199
Target:  5'- gCGCUccGcCCGuCGGGGGGACGGGuGCa-- -3'
miRNA:   3'- aGCGA--C-GGC-GCCUCCUUGCCU-CGcuc -5'
21483 3' -60.1 NC_004812.1 + 1962 0.69 0.55243
Target:  5'- gCGC-GCCGggcgcCGGGGGGAgGGGGgGAGg -3'
miRNA:   3'- aGCGaCGGC-----GCCUCCUUgCCUCgCUC- -5'
21483 3' -60.1 NC_004812.1 + 2041 0.66 0.766199
Target:  5'- cUCGgucgGCgGCGGGGGGcGCGGGG-GAGg -3'
miRNA:   3'- -AGCga--CGgCGCCUCCU-UGCCUCgCUC- -5'
21483 3' -60.1 NC_004812.1 + 2456 0.69 0.591513
Target:  5'- gCGCcucGCCGCGGcGGAAgucCGGGGCGc- -3'
miRNA:   3'- aGCGa--CGGCGCCuCCUU---GCCUCGCuc -5'
21483 3' -60.1 NC_004812.1 + 3073 0.67 0.709625
Target:  5'- -gGCcGCCGCGcGcgucgguccaGGcGGGCGGGGCGGGg -3'
miRNA:   3'- agCGaCGGCGC-C----------UC-CUUGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 3448 0.71 0.467935
Target:  5'- -aGCcGCCGCGGGGGu-CGGgcccGGCGGGc -3'
miRNA:   3'- agCGaCGGCGCCUCCuuGCC----UCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 3490 0.68 0.611244
Target:  5'- gCGCggcggGCCGCGGGcgcgggcccGGGGCcggcggccccgGGGGCGGGg -3'
miRNA:   3'- aGCGa----CGGCGCCU---------CCUUG-----------CCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 3902 0.68 0.660707
Target:  5'- gCGCgGgCGCGGcGGcGCGGcGGCGGGg -3'
miRNA:   3'- aGCGaCgGCGCCuCCuUGCC-UCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 4708 0.71 0.477014
Target:  5'- -gGCccGCCGCGcGAGG-ACGGGGCGuGu -3'
miRNA:   3'- agCGa-CGGCGC-CUCCuUGCCUCGCuC- -5'
21483 3' -60.1 NC_004812.1 + 4777 0.75 0.26906
Target:  5'- gCGCgGUgGgGGAgGGGGCGGGGCGAGg -3'
miRNA:   3'- aGCGaCGgCgCCU-CCUUGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 4849 0.7 0.495429
Target:  5'- cUGCgggGCCGgGGAGGGgccGCGGcccgcGCGAGa -3'
miRNA:   3'- aGCGa--CGGCgCCUCCU---UGCCu----CGCUC- -5'
21483 3' -60.1 NC_004812.1 + 4924 0.73 0.343877
Target:  5'- cUCGCUGCggccCGCGGAGGcggcgcuggagGGCGGccGGCGGGc -3'
miRNA:   3'- -AGCGACG----GCGCCUCC-----------UUGCC--UCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 4979 0.7 0.520783
Target:  5'- uUCuCUGCgCGCGGGGGGccgugcgccgcaggGCGG-GCGGGg -3'
miRNA:   3'- -AGcGACG-GCGCCUCCU--------------UGCCuCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 5047 0.66 0.747698
Target:  5'- -aGC-GCCGCGGucacGGGGGCccGGGCGGGa -3'
miRNA:   3'- agCGaCGGCGCC----UCCUUGc-CUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 5263 0.66 0.747698
Target:  5'- aCGC-GCgGCaGGGGcACGGAGgCGGGg -3'
miRNA:   3'- aGCGaCGgCGcCUCCuUGCCUC-GCUC- -5'
21483 3' -60.1 NC_004812.1 + 5323 0.66 0.747698
Target:  5'- aCGC-GCgGCaGGGGcACGGAGgCGGGg -3'
miRNA:   3'- aGCGaCGgCGcCUCCuUGCCUC-GCUC- -5'
21483 3' -60.1 NC_004812.1 + 5377 0.66 0.757
Target:  5'- -gGCUcucCCGCGGcGGGAGgGGGGuCGGGg -3'
miRNA:   3'- agCGAc--GGCGCC-UCCUUgCCUC-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.