miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 3' -60.1 NC_004812.1 + 70406 1.08 0.001647
Target:  5'- gUCGCUGCCGCGGAGGAACGGAGCGAGc -3'
miRNA:   3'- -AGCGACGGCGCCUCCUUGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 105442 0.81 0.12407
Target:  5'- cUCGgUGCgCGgGGAGGGggucGCGGAGCGAGg -3'
miRNA:   3'- -AGCgACG-GCgCCUCCU----UGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 154817 0.79 0.147797
Target:  5'- cCGCcaUGCUGCGGcGGGGCGGAGCGGc -3'
miRNA:   3'- aGCG--ACGGCGCCuCCUUGCCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 123916 0.79 0.147797
Target:  5'- cCGCcaUGCUGCGGcGGGGCGGAGCGGc -3'
miRNA:   3'- aGCG--ACGGCGCCuCCUUGCCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 12281 0.79 0.151507
Target:  5'- aC-CUGCC-CGGGGGGGCGGAGCGAa -3'
miRNA:   3'- aGcGACGGcGCCUCCUUGCCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 112874 0.78 0.184344
Target:  5'- gCGCcGCCGC-GAGGGACGGgcGGCGAGa -3'
miRNA:   3'- aGCGaCGGCGcCUCCUUGCC--UCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 72337 0.78 0.184344
Target:  5'- -gGCggGCCGCGGGGGGGagggGGGGCGGGg -3'
miRNA:   3'- agCGa-CGGCGCCUCCUUg---CCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 29234 0.77 0.1982
Target:  5'- -gGCggggGUCGCGGAGGAGCGGGcCGGGg -3'
miRNA:   3'- agCGa---CGGCGCCUCCUUGCCUcGCUC- -5'
21483 3' -60.1 NC_004812.1 + 154742 0.77 0.1982
Target:  5'- -gGCggggGUCGCGGAGGAGCGGGcCGGGg -3'
miRNA:   3'- agCGa---CGGCGCCUCCUUGCCUcGCUC- -5'
21483 3' -60.1 NC_004812.1 + 81426 0.77 0.207935
Target:  5'- cUCGCgGCacacgaGCGGcAGGcGCGGAGCGAGg -3'
miRNA:   3'- -AGCGaCGg-----CGCC-UCCuUGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 100863 0.77 0.22331
Target:  5'- aCGggGCCGCGGGGGAgGCGGGG-GAGg -3'
miRNA:   3'- aGCgaCGGCGCCUCCU-UGCCUCgCUC- -5'
21483 3' -60.1 NC_004812.1 + 11300 0.76 0.234088
Target:  5'- gCGC-GCCGCGcGGGGcgccGCGGGGCGGGg -3'
miRNA:   3'- aGCGaCGGCGC-CUCCu---UGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 36581 0.76 0.245301
Target:  5'- aCGUUGCCGCGGGGcuGCGuGAGCGuGa -3'
miRNA:   3'- aGCGACGGCGCCUCcuUGC-CUCGCuC- -5'
21483 3' -60.1 NC_004812.1 + 20114 0.76 0.251073
Target:  5'- gCGCgcagcgGCgCGCGGGGGAGCGGAcCGGGc -3'
miRNA:   3'- aGCGa-----CG-GCGCCUCCUUGCCUcGCUC- -5'
21483 3' -60.1 NC_004812.1 + 29361 0.75 0.262952
Target:  5'- gCGCgggcucggGCCGCGGAGGcgcGCGGGGcCGGGc -3'
miRNA:   3'- aGCGa-------CGGCGCCUCCu--UGCCUC-GCUC- -5'
21483 3' -60.1 NC_004812.1 + 154869 0.75 0.262952
Target:  5'- gCGCgggcucggGCCGCGGAGGcgcGCGGGGcCGGGc -3'
miRNA:   3'- aGCGa-------CGGCGCCUCCu--UGCCUC-GCUC- -5'
21483 3' -60.1 NC_004812.1 + 35678 0.75 0.26906
Target:  5'- gCGCgGUgGgGGAgGGGGCGGGGCGAGg -3'
miRNA:   3'- aGCGaCGgCgCCU-CCUUGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 4777 0.75 0.26906
Target:  5'- gCGCgGUgGgGGAgGGGGCGGGGCGAGg -3'
miRNA:   3'- aGCGaCGgCgCCU-CCUUGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 121691 0.75 0.28162
Target:  5'- gCGCgagagGaCGCGGAGGAgGCGGAGCGGc -3'
miRNA:   3'- aGCGa----CgGCGCCUCCU-UGCCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 152592 0.75 0.28162
Target:  5'- gCGCgagagGaCGCGGAGGAgGCGGAGCGGc -3'
miRNA:   3'- aGCGa----CgGCGCCUCCU-UGCCUCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.