miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 3' -60.1 NC_004812.1 + 71770 0.73 0.351376
Target:  5'- gUCGCUGCgacagGCGGGGGGGCGGGGgucgcCGAa -3'
miRNA:   3'- -AGCGACGg----CGCCUCCUUGCCUC-----GCUc -5'
21483 3' -60.1 NC_004812.1 + 155704 0.74 0.308125
Target:  5'- gCGCgagGgCGUGGGGGAGgGGGGUGGGg -3'
miRNA:   3'- aGCGa--CgGCGCCUCCUUgCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 121640 0.74 0.322076
Target:  5'- gCGCgGCCgGCGGAGGA--GGAGCGGc -3'
miRNA:   3'- aGCGaCGG-CGCCUCCUugCCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 54658 0.74 0.329226
Target:  5'- gUCGCcGCCGCGGGGcccAGCGGccgggucgcGGCGAGg -3'
miRNA:   3'- -AGCGaCGGCGCCUCc--UUGCC---------UCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 69488 0.74 0.336493
Target:  5'- gCGCcGCCGCcgaacccaGAGGGACGGGGuCGAGa -3'
miRNA:   3'- aGCGaCGGCGc-------CUCCUUGCCUC-GCUC- -5'
21483 3' -60.1 NC_004812.1 + 71927 0.74 0.336493
Target:  5'- gCGCUGCaGCGGcgAGGAcggcGCGGGGCGGc -3'
miRNA:   3'- aGCGACGgCGCC--UCCU----UGCCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 130432 0.73 0.343877
Target:  5'- cUCGCUGCggccCGCGGAGGcggcgcuggagGGCGGccGGCGGGc -3'
miRNA:   3'- -AGCGACG----GCGCCUCC-----------UUGCC--UCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 121852 0.73 0.349114
Target:  5'- cCGCggcgGCCGCGGcgaccacggcgcagAGGGGCGGGGCcuGGGg -3'
miRNA:   3'- aGCGa---CGGCGCC--------------UCCUUGCCUCG--CUC- -5'
21483 3' -60.1 NC_004812.1 + 155914 0.73 0.351376
Target:  5'- -gGCUGCCGCGccGAGGAGgcCGGGccGCGGGa -3'
miRNA:   3'- agCGACGGCGC--CUCCUU--GCCU--CGCUC- -5'
21483 3' -60.1 NC_004812.1 + 36447 0.74 0.301325
Target:  5'- cCGCgGCCGCGuugucGAGGAGCGGGGgGGc -3'
miRNA:   3'- aGCGaCGGCGC-----CUCCUUGCCUCgCUc -5'
21483 3' -60.1 NC_004812.1 + 79315 0.75 0.294641
Target:  5'- gUCGCcGcCCGCGGAaucGGAUGGGGCGGGg -3'
miRNA:   3'- -AGCGaC-GGCGCCUc--CUUGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 155875 0.75 0.294641
Target:  5'- gCGC-GCgGCGGGGGAGgggaGGGGCGGGg -3'
miRNA:   3'- aGCGaCGgCGCCUCCUUg---CCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 123916 0.79 0.147797
Target:  5'- cCGCcaUGCUGCGGcGGGGCGGAGCGGc -3'
miRNA:   3'- aGCG--ACGGCGCCuCCUUGCCUCGCUc -5'
21483 3' -60.1 NC_004812.1 + 72337 0.78 0.184344
Target:  5'- -gGCggGCCGCGGGGGGGagggGGGGCGGGg -3'
miRNA:   3'- agCGa-CGGCGCCUCCUUg---CCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 112874 0.78 0.184344
Target:  5'- gCGCcGCCGC-GAGGGACGGgcGGCGAGa -3'
miRNA:   3'- aGCGaCGGCGcCUCCUUGCC--UCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 154742 0.77 0.1982
Target:  5'- -gGCggggGUCGCGGAGGAGCGGGcCGGGg -3'
miRNA:   3'- agCGa---CGGCGCCUCCUUGCCUcGCUC- -5'
21483 3' -60.1 NC_004812.1 + 36581 0.76 0.245301
Target:  5'- aCGUUGCCGCGGGGcuGCGuGAGCGuGa -3'
miRNA:   3'- aGCGACGGCGCCUCcuUGC-CUCGCuC- -5'
21483 3' -60.1 NC_004812.1 + 154869 0.75 0.262952
Target:  5'- gCGCgggcucggGCCGCGGAGGcgcGCGGGGcCGGGc -3'
miRNA:   3'- aGCGa-------CGGCGCCUCCu--UGCCUC-GCUC- -5'
21483 3' -60.1 NC_004812.1 + 4777 0.75 0.26906
Target:  5'- gCGCgGUgGgGGAgGGGGCGGGGCGAGg -3'
miRNA:   3'- aGCGaCGgCgCCU-CCUUGCCUCGCUC- -5'
21483 3' -60.1 NC_004812.1 + 121691 0.75 0.28162
Target:  5'- gCGCgagagGaCGCGGAGGAgGCGGAGCGGc -3'
miRNA:   3'- aGCGa----CgGCGCCUCCU-UGCCUCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.