miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 5' -56.7 NC_004812.1 + 23792 0.66 0.848515
Target:  5'- cGACGcGugCGCGGcuccaugCGCGC-CGCGCGGg -3'
miRNA:   3'- -CUGC-UugGCGUCa------GCGCGuGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 62314 0.66 0.856406
Target:  5'- cGAUGAGuuUCGCuucGUCGCGCcccGCGCGCu- -3'
miRNA:   3'- -CUGCUU--GGCGu--CAGCGCG---UGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 18349 0.66 0.864092
Target:  5'- cGGCGcgcGACCGCGGcCGCcGCGgcgUACGCGGg -3'
miRNA:   3'- -CUGC---UUGGCGUCaGCG-CGU---GUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 71899 0.66 0.848515
Target:  5'- cGGCGGGCCggGCGG-CGCGgCGC-CGCGGg -3'
miRNA:   3'- -CUGCUUGG--CGUCaGCGC-GUGuGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 41220 0.66 0.881666
Target:  5'- cGGCGAcuacgcGCUGCGGUCGCcgccuucgucugucgGCGC-CGCGu -3'
miRNA:   3'- -CUGCU------UGGCGUCAGCG---------------CGUGuGCGUu -5'
21483 5' -56.7 NC_004812.1 + 71952 0.66 0.848515
Target:  5'- gGGCGGcccuGCCGCGa-CGCGCGC-CGCGGg -3'
miRNA:   3'- -CUGCU----UGGCGUcaGCGCGUGuGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 55370 0.66 0.856406
Target:  5'- cGugGuGCCGCAG-CaGCGagGCACGCAu -3'
miRNA:   3'- -CugCuUGGCGUCaG-CGCg-UGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 95753 0.66 0.848515
Target:  5'- cGCGucGCgGCGGcCGCGCACAC-CGAg -3'
miRNA:   3'- cUGCu-UGgCGUCaGCGCGUGUGcGUU- -5'
21483 5' -56.7 NC_004812.1 + 125429 0.66 0.848515
Target:  5'- -cCGGACgGCGGcggaGCGCGCGCGgGAg -3'
miRNA:   3'- cuGCUUGgCGUCag--CGCGUGUGCgUU- -5'
21483 5' -56.7 NC_004812.1 + 31802 0.66 0.847715
Target:  5'- cGACGAACCGCcccuugguggcguAGUgGUGC-CGCGgGAc -3'
miRNA:   3'- -CUGCUUGGCG-------------UCAgCGCGuGUGCgUU- -5'
21483 5' -56.7 NC_004812.1 + 72230 0.66 0.864092
Target:  5'- cGCGGACUGCggcggggcguccGGUCG-GCGgGCGCGAg -3'
miRNA:   3'- cUGCUUGGCG------------UCAGCgCGUgUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 37353 0.66 0.848515
Target:  5'- cACGuuCUGCAgcGUgGCGUACACGCGGu -3'
miRNA:   3'- cUGCuuGGCGU--CAgCGCGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 84835 0.66 0.846109
Target:  5'- uGACGGACCucugccagccggacGCAGaUCGCGCcgGCACGg-- -3'
miRNA:   3'- -CUGCUUGG--------------CGUC-AGCGCG--UGUGCguu -5'
21483 5' -56.7 NC_004812.1 + 19552 0.66 0.856406
Target:  5'- uGCGGACCGuCAG-CGaCGCggccgACGCGCAc -3'
miRNA:   3'- cUGCUUGGC-GUCaGC-GCG-----UGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 19827 0.66 0.864092
Target:  5'- --aGGGCCacCAG-CGCGCACGCGUAc -3'
miRNA:   3'- cugCUUGGc-GUCaGCGCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 98433 0.66 0.848515
Target:  5'- cGGCG-GCCGCGGggCG-GCAgGCGCGGg -3'
miRNA:   3'- -CUGCuUGGCGUCa-GCgCGUgUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 152975 0.66 0.856406
Target:  5'- cGCGGGCgGCGccgCGCGCccgccgGCGCGCAAg -3'
miRNA:   3'- cUGCUUGgCGUca-GCGCG------UGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 82802 0.66 0.856406
Target:  5'- -uCGAACacgGCGGcguccgUGCGCACGCGCGu -3'
miRNA:   3'- cuGCUUGg--CGUCa-----GCGCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 99454 0.66 0.863332
Target:  5'- -gUGGACCGC-GUCGCGCagccccaGCACcGCGg -3'
miRNA:   3'- cuGCUUGGCGuCAGCGCG-------UGUG-CGUu -5'
21483 5' -56.7 NC_004812.1 + 38770 0.66 0.848515
Target:  5'- cGAUGGucACCa-GGUcCGCGCGCACGCGc -3'
miRNA:   3'- -CUGCU--UGGcgUCA-GCGCGUGUGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.