miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 5' -56.7 NC_004812.1 + 45 0.75 0.362315
Target:  5'- cGGCGGGCCGCGGgcgCGgcggcgcggcgccaCGCGCGCGCAc -3'
miRNA:   3'- -CUGCUUGGCGUCa--GC--------------GCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 95 0.69 0.720884
Target:  5'- gGACGGGCCGgGG-CGCGCGCGgGg-- -3'
miRNA:   3'- -CUGCUUGGCgUCaGCGCGUGUgCguu -5'
21483 5' -56.7 NC_004812.1 + 168 0.68 0.777964
Target:  5'- cGCGGcccGCCGCGcGuuuauuuUCGCGCGCGCGCc- -3'
miRNA:   3'- cUGCU---UGGCGU-C-------AGCGCGUGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 461 0.69 0.700832
Target:  5'- -cCGGGCCGCcGgcgcgccugCGUGCGCACGCGc -3'
miRNA:   3'- cuGCUUGGCGuCa--------GCGCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 579 0.68 0.759991
Target:  5'- cGugGAGCCGCGGgCGCgGCuccgguaGCGCGGa -3'
miRNA:   3'- -CugCUUGGCGUCaGCG-CGug-----UGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 2222 0.74 0.41523
Target:  5'- cGCGGcCCGCGGcccaGCGCACGCGCGg -3'
miRNA:   3'- cUGCUuGGCGUCag--CGCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 2255 0.66 0.871566
Target:  5'- cGGCGGgguCCGC-GUCgGCGUccGCGCGCAg -3'
miRNA:   3'- -CUGCUu--GGCGuCAG-CGCG--UGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 2286 0.67 0.796367
Target:  5'- cACGAGCgGCgcggcgucggGGUCcggcucgagcaggGCGCGCGCGCAGa -3'
miRNA:   3'- cUGCUUGgCG----------UCAG-------------CGCGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 2346 0.67 0.815045
Target:  5'- cGCGGGCgGCAGggCGUcgggcccgGCGCGCGCGg -3'
miRNA:   3'- cUGCUUGgCGUCa-GCG--------CGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 2402 0.79 0.228498
Target:  5'- aGACGGGCCGCAGcggCGCggccagcccccaGCGCGCGCAGg -3'
miRNA:   3'- -CUGCUUGGCGUCa--GCG------------CGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 2753 0.7 0.649838
Target:  5'- cGGCGGGCCaGCGGaCGuCGCACuGCGCGg -3'
miRNA:   3'- -CUGCUUGG-CGUCaGC-GCGUG-UGCGUu -5'
21483 5' -56.7 NC_004812.1 + 3263 0.78 0.262301
Target:  5'- gGGCGGGCCGCAG-CGCGCggcgagcgaggccaGCGCGCGc -3'
miRNA:   3'- -CUGCUUGGCGUCaGCGCG--------------UGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 3493 0.68 0.740629
Target:  5'- cGGCGGGCCGCGGgCGCGgGCcCGgGg -3'
miRNA:   3'- -CUGCUUGGCGUCaGCGCgUGuGCgUu -5'
21483 5' -56.7 NC_004812.1 + 4281 0.73 0.469799
Target:  5'- cGCGcGCCaGCAGgggCGCGUACGCGCGc -3'
miRNA:   3'- cUGCuUGG-CGUCa--GCGCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 4465 0.7 0.670339
Target:  5'- --gGAGCUGCuGUUGCGC-CGCGCGc -3'
miRNA:   3'- cugCUUGGCGuCAGCGCGuGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 4895 0.67 0.806238
Target:  5'- -cCGGccACgGCGG-CGCGCGCGCGCc- -3'
miRNA:   3'- cuGCU--UGgCGUCaGCGCGUGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 5848 0.68 0.744534
Target:  5'- cGAgGAACCGCGGcugccgucuacacgaUCGCGCGguCGCc- -3'
miRNA:   3'- -CUgCUUGGCGUC---------------AGCGCGUguGCGuu -5'
21483 5' -56.7 NC_004812.1 + 5876 0.7 0.670339
Target:  5'- cGCGGGCCGgGGg-GCGCGgGCGCGGg -3'
miRNA:   3'- cUGCUUGGCgUCagCGCGUgUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 7922 0.69 0.690714
Target:  5'- --gGGGCUGCGG-CGCGCGCcgGCGCGg -3'
miRNA:   3'- cugCUUGGCGUCaGCGCGUG--UGCGUu -5'
21483 5' -56.7 NC_004812.1 + 10801 0.67 0.840427
Target:  5'- cGGCgGGGCCGCAcGUcucCGCGaggACACGCAGg -3'
miRNA:   3'- -CUG-CUUGGCGU-CA---GCGCg--UGUGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.