miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 5' -56.7 NC_004812.1 + 35643 0.71 0.619001
Target:  5'- uGACGuGCCGCGGgCGCGCGCGgGgGu -3'
miRNA:   3'- -CUGCuUGGCGUCaGCGCGUGUgCgUu -5'
21483 5' -56.7 NC_004812.1 + 129789 0.73 0.469799
Target:  5'- cGCGcGCCaGCAGgggCGCGUACGCGCGc -3'
miRNA:   3'- cUGCuUGG-CGUCa--GCGCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 73128 0.73 0.479249
Target:  5'- cGCGGGCCGCGGgauccggCGCGCcgccgcggaccaGCACGCGc -3'
miRNA:   3'- cUGCUUGGCGUCa------GCGCG------------UGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 97322 0.73 0.498422
Target:  5'- cGGCGGGCgGguGcCGCGCGCcCGCGAc -3'
miRNA:   3'- -CUGCUUGgCguCaGCGCGUGuGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 154974 0.73 0.508136
Target:  5'- gGGCGGGCCGCgcGGgaccCGCGCGCACGg-- -3'
miRNA:   3'- -CUGCUUGGCG--UCa---GCGCGUGUGCguu -5'
21483 5' -56.7 NC_004812.1 + 31598 0.72 0.517929
Target:  5'- gGACGGGCCGCGcGcCGCGCAgGgGCGc -3'
miRNA:   3'- -CUGCUUGGCGU-CaGCGCGUgUgCGUu -5'
21483 5' -56.7 NC_004812.1 + 76988 0.72 0.517929
Target:  5'- gGGCGGcuuugGCCGCcucGG-CGCGCGCGCGCGc -3'
miRNA:   3'- -CUGCU-----UGGCG---UCaGCGCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 125269 0.72 0.527797
Target:  5'- -cCGGGCuCGCGG-CGgGCGCGCGCGAg -3'
miRNA:   3'- cuGCUUG-GCGUCaGCgCGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 18080 0.72 0.547734
Target:  5'- aGAcCGAGCCGCcguccgGGcCGcCGCACACGCGGa -3'
miRNA:   3'- -CU-GCUUGGCG------UCaGC-GCGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 94265 0.73 0.469799
Target:  5'- cACGcGCCGCGGgCGCGCGC-CGCGg -3'
miRNA:   3'- cUGCuUGGCGUCaGCGCGUGuGCGUu -5'
21483 5' -56.7 NC_004812.1 + 125229 0.73 0.460445
Target:  5'- -uCGGGCaGCAGgcgCGUGCGCACGCAGg -3'
miRNA:   3'- cuGCUUGgCGUCa--GCGCGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 153796 0.75 0.381082
Target:  5'- cGACGGGcCCGCcGUCGCGCGC-CGCc- -3'
miRNA:   3'- -CUGCUU-GGCGuCAGCGCGUGuGCGuu -5'
21483 5' -56.7 NC_004812.1 + 151705 0.79 0.228498
Target:  5'- aGCGAGCgGCGG-CGCGCGCGCGCc- -3'
miRNA:   3'- cUGCUUGgCGUCaGCGCGUGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 128771 0.78 0.262301
Target:  5'- gGGCGGGCCGCAG-CGCGCggcgagcgaggccaGCGCGCGc -3'
miRNA:   3'- -CUGCUUGGCGUCaGCGCG--------------UGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 140857 0.77 0.290411
Target:  5'- cGACGuGCCGCAGgCGCGCAagGCGCGGg -3'
miRNA:   3'- -CUGCuUGGCGUCaGCGCGUg-UGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 104516 0.76 0.318631
Target:  5'- gGACGGGCgGUcGUCGCGCGCcCGCGAa -3'
miRNA:   3'- -CUGCUUGgCGuCAGCGCGUGuGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 45 0.75 0.362315
Target:  5'- cGGCGGGCCGCGGgcgCGgcggcgcggcgccaCGCGCGCGCAc -3'
miRNA:   3'- -CUGCUUGGCGUCa--GC--------------GCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 156455 0.75 0.362315
Target:  5'- cGGCGGGCCGCGGgcgCGgcggcgcggcgccaCGCGCGCGCAc -3'
miRNA:   3'- -CUGCUUGGCGUCa--GC--------------GCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 106215 0.75 0.372843
Target:  5'- cGACGGACuucugCGCGGUgGUGCACGCGCc- -3'
miRNA:   3'- -CUGCUUG-----GCGUCAgCGCGUGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 127731 0.75 0.372843
Target:  5'- cGCGGcCCGCGGccaGCGCACGCGCGg -3'
miRNA:   3'- cUGCUuGGCGUCag-CGCGUGUGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.