miRNA display CGI


Results 1 - 20 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 5' -56.7 NC_004812.1 + 70441 1.05 0.004022
Target:  5'- gGACGAACCGCAGUCGCGCACACGCAAc -3'
miRNA:   3'- -CUGCUUGGCGUCAGCGCGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 138264 0.82 0.137852
Target:  5'- cGGCG-GCCGCGGUCGCGCGC-CGCGc -3'
miRNA:   3'- -CUGCuUGGCGUCAGCGCGUGuGCGUu -5'
21483 5' -56.7 NC_004812.1 + 43401 0.81 0.173664
Target:  5'- aGAUGGACCGCAGcgCgGCGCGCACGCu- -3'
miRNA:   3'- -CUGCUUGGCGUCa-G-CGCGUGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 2402 0.79 0.228498
Target:  5'- aGACGGGCCGCAGcggCGCggccagcccccaGCGCGCGCAGg -3'
miRNA:   3'- -CUGCUUGGCGUCa--GCG------------CGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 26197 0.79 0.228498
Target:  5'- aGCGAGCgGCGG-CGCGCGCGCGCc- -3'
miRNA:   3'- cUGCUUGgCGUCaGCGCGUGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 127910 0.79 0.228498
Target:  5'- aGACGGGCCGCAGcggCGCggccagcccccaGCGCGCGCAGg -3'
miRNA:   3'- -CUGCUUGGCGUCa--GCG------------CGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 151705 0.79 0.228498
Target:  5'- aGCGAGCgGCGG-CGCGCGCGCGCc- -3'
miRNA:   3'- cUGCUUGgCGUCaGCGCGUGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 128771 0.78 0.262301
Target:  5'- gGGCGGGCCGCAG-CGCGCggcgagcgaggccaGCGCGCGc -3'
miRNA:   3'- -CUGCUUGGCGUCaGCGCG--------------UGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 3263 0.78 0.262301
Target:  5'- gGGCGGGCCGCAG-CGCGCggcgagcgaggccaGCGCGCGc -3'
miRNA:   3'- -CUGCUUGGCGUCaGCGCG--------------UGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 140857 0.77 0.290411
Target:  5'- cGACGuGCCGCAGgCGCGCAagGCGCGGg -3'
miRNA:   3'- -CUGCuUGGCGUCaGCGCGUg-UGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 18829 0.77 0.297278
Target:  5'- cGGCGGGCgGCGGUUGCGCGC-CGCc- -3'
miRNA:   3'- -CUGCUUGgCGUCAGCGCGUGuGCGuu -5'
21483 5' -56.7 NC_004812.1 + 74345 0.77 0.311387
Target:  5'- uGGCGAGCCuGCGG-CGCGCGCugGUGGg -3'
miRNA:   3'- -CUGCUUGG-CGUCaGCGCGUGugCGUU- -5'
21483 5' -56.7 NC_004812.1 + 104516 0.76 0.318631
Target:  5'- gGACGGGCgGUcGUCGCGCGCcCGCGAa -3'
miRNA:   3'- -CUGCUUGgCGuCAGCGCGUGuGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 111741 0.76 0.326
Target:  5'- uGCGAcGCCGCGcUCGUGCGCGCGCGc -3'
miRNA:   3'- cUGCU-UGGCGUcAGCGCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 51627 0.76 0.326
Target:  5'- cGGCGGcCCGCGGcCGCGUGCGCGCc- -3'
miRNA:   3'- -CUGCUuGGCGUCaGCGCGUGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 62340 0.76 0.341116
Target:  5'- -cCGGGCCGCGG-CGCGCGCcCGCGg -3'
miRNA:   3'- cuGCUUGGCGUCaGCGCGUGuGCGUu -5'
21483 5' -56.7 NC_004812.1 + 45 0.75 0.362315
Target:  5'- cGGCGGGCCGCGGgcgCGgcggcgcggcgccaCGCGCGCGCAc -3'
miRNA:   3'- -CUGCUUGGCGUCa--GC--------------GCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 30946 0.75 0.362315
Target:  5'- cGGCGGGCCGCGGgcgCGgcggcgcggcgccaCGCGCGCGCAc -3'
miRNA:   3'- -CUGCUUGGCGUCa--GC--------------GCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 156455 0.75 0.362315
Target:  5'- cGGCGGGCCGCGGgcgCGgcggcgcggcgccaCGCGCGCGCAc -3'
miRNA:   3'- -CUGCUUGGCGUCa--GC--------------GCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 72833 0.75 0.372026
Target:  5'- cGACGGGCCGCugcAGUCgcuguggGCGCGCugGCGu -3'
miRNA:   3'- -CUGCUUGGCG---UCAG-------CGCGUGugCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.