Results 1 - 20 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21492 | 3' | -54.7 | NC_004812.1 | + | 117325 | 0.73 | 0.633151 |
Target: 5'- gCCGCGCccccGGACCccGgGCCCCGGCGGCc -3' miRNA: 3'- -GGUGUG----CCUGGa-CgUGGGGUUGUUGu -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 67401 | 0.74 | 0.581964 |
Target: 5'- gCCGCGCGGAgCCgGgGCCCCGGCucccaGACGg -3' miRNA: 3'- -GGUGUGCCU-GGaCgUGGGGUUG-----UUGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 137658 | 0.74 | 0.60238 |
Target: 5'- cCCGgACGGACgagcgGCACCCguACGACAc -3' miRNA: 3'- -GGUgUGCCUGga---CGUGGGguUGUUGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 101044 | 0.73 | 0.612625 |
Target: 5'- gCACGCGGGCCaGCaggGCCCCggUGGCc -3' miRNA: 3'- gGUGUGCCUGGaCG---UGGGGuuGUUGu -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 120850 | 0.73 | 0.612625 |
Target: 5'- cUCGCGCGGGCCgcgGCcccuCCCCGGCcccGCAg -3' miRNA: 3'- -GGUGUGCCUGGa--CGu---GGGGUUGu--UGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 32175 | 0.73 | 0.612625 |
Target: 5'- cCCGCGCGGACCggGUGCCuCCGGgccacgucCAGCAc -3' miRNA: 3'- -GGUGUGCCUGGa-CGUGG-GGUU--------GUUGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 110586 | 0.73 | 0.619805 |
Target: 5'- gCACGCGGACCcgcgGCgguuucacuuccacGCCCCGcccGCAACGg -3' miRNA: 3'- gGUGUGCCUGGa---CG--------------UGGGGU---UGUUGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 135542 | 0.73 | 0.622884 |
Target: 5'- gCCGcCGCGGACUcGgACCCCGGCcACAg -3' miRNA: 3'- -GGU-GUGCCUGGaCgUGGGGUUGuUGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 30892 | 0.73 | 0.633151 |
Target: 5'- gCGCGCGGcCCcGCGCCCCGcgGGCAc -3' miRNA: 3'- gGUGUGCCuGGaCGUGGGGUugUUGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 67281 | 0.74 | 0.571807 |
Target: 5'- uCCGCGuCGGGCC-GgGCCCCGGCGccGCAg -3' miRNA: 3'- -GGUGU-GCCUGGaCgUGGGGUUGU--UGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 88859 | 0.74 | 0.551628 |
Target: 5'- gUCACGCGcGACggcgagacgCUGCGCCCCAACAc-- -3' miRNA: 3'- -GGUGUGC-CUG---------GACGUGGGGUUGUugu -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 138692 | 0.75 | 0.541619 |
Target: 5'- cCCgAC-CGGGCCUcGCGCCCgGACGACc -3' miRNA: 3'- -GG-UGuGCCUGGA-CGUGGGgUUGUUGu -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 129247 | 0.79 | 0.31446 |
Target: 5'- -gGCGCGGGCC-GCGCgCCAGCAGCGg -3' miRNA: 3'- ggUGUGCCUGGaCGUGgGGUUGUUGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 130143 | 0.77 | 0.401437 |
Target: 5'- cCCACACGGGCgCggGCGCgCCGGCGGCc -3' miRNA: 3'- -GGUGUGCCUG-Ga-CGUGgGGUUGUUGu -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 96270 | 0.76 | 0.46418 |
Target: 5'- gCGgGCGGGCCUgGCGCCCCcgcGCAACc -3' miRNA: 3'- gGUgUGCCUGGA-CGUGGGGu--UGUUGu -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 74321 | 0.76 | 0.47356 |
Target: 5'- gCGCGCGGGCCUcgaGCGCCCgAACGucgACGa -3' miRNA: 3'- gGUGUGCCUGGA---CGUGGGgUUGU---UGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 153878 | 0.76 | 0.486849 |
Target: 5'- gCCGCGCGcGACCUGCGCCgcgccgugcuggccuCCGGCcGCGu -3' miRNA: 3'- -GGUGUGC-CUGGACGUGG---------------GGUUGuUGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 81208 | 0.75 | 0.502248 |
Target: 5'- aCGCGCGGGCguggaUGC-CCCCGGCGACc -3' miRNA: 3'- gGUGUGCCUGg----ACGuGGGGUUGUUGu -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 125193 | 0.75 | 0.52179 |
Target: 5'- gCGCGCGGGCC--CGCCCCGGCcGCGg -3' miRNA: 3'- gGUGUGCCUGGacGUGGGGUUGuUGU- -5' |
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21492 | 3' | -54.7 | NC_004812.1 | + | 95580 | 0.75 | 0.538628 |
Target: 5'- aCCGCACGG-CC-GCGCCCgcgcgcgggcgcggCAGCAGCAa -3' miRNA: 3'- -GGUGUGCCuGGaCGUGGG--------------GUUGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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