miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 3' -54.7 NC_004812.1 + 133151 0.66 0.935361
Target:  5'- gCCGCGCGccucgccgacGACCcgcucucGCGCCCCGACcACc -3'
miRNA:   3'- -GGUGUGC----------CUGGa------CGUGGGGUUGuUGu -5'
21492 3' -54.7 NC_004812.1 + 132999 0.66 0.942961
Target:  5'- nCCGCGCGGAcgaCCgggGCGCCCaacccccgccccGCGGCGc -3'
miRNA:   3'- -GGUGUGCCU---GGa--CGUGGGgu----------UGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 48189 0.66 0.935361
Target:  5'- -aACGCGGcCCUGCagGCCgCCGACGu-- -3'
miRNA:   3'- ggUGUGCCuGGACG--UGG-GGUUGUugu -5'
21492 3' -54.7 NC_004812.1 + 92826 0.66 0.940182
Target:  5'- gCGCGCcGGCCaGUACCCCGGCc--- -3'
miRNA:   3'- gGUGUGcCUGGaCGUGGGGUUGuugu -5'
21492 3' -54.7 NC_004812.1 + 74766 0.66 0.940182
Target:  5'- gCGCGCGGcCCcgaggGC-CUCCGGCGACu -3'
miRNA:   3'- gGUGUGCCuGGa----CGuGGGGUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 19011 0.66 0.940182
Target:  5'- cCCGCggccGCGGGCCgGCGCagcgCgGGCGGCAg -3'
miRNA:   3'- -GGUG----UGCCUGGaCGUGg---GgUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 105913 0.66 0.940182
Target:  5'- gCgGCGCGGcucGCCgaguCCCCGGCGACGc -3'
miRNA:   3'- -GgUGUGCC---UGGacguGGGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 107701 0.66 0.953226
Target:  5'- aCCACgGCGuGGCCcgcgaGCACCCCGcgcucguaGCGGCc -3'
miRNA:   3'- -GGUG-UGC-CUGGa----CGUGGGGU--------UGUUGu -5'
21492 3' -54.7 NC_004812.1 + 119288 0.66 0.943868
Target:  5'- gCCGgGCGGGCUguacggcgcgccGUACCCCGGCGu-- -3'
miRNA:   3'- -GGUgUGCCUGGa-----------CGUGGGGUUGUugu -5'
21492 3' -54.7 NC_004812.1 + 127922 0.66 0.935361
Target:  5'- gCgGCGCGG-CCaGC-CCCCAGCGcgcGCAn -3'
miRNA:   3'- -GgUGUGCCuGGaCGuGGGGUUGU---UGU- -5'
21492 3' -54.7 NC_004812.1 + 102183 0.66 0.940182
Target:  5'- cCCGCgGCGGGCCcauCGacaCCCGGCGGCGu -3'
miRNA:   3'- -GGUG-UGCCUGGac-GUg--GGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 55166 0.66 0.935361
Target:  5'- cCCACuCGGugCcgGCGCCCC--CGGCc -3'
miRNA:   3'- -GGUGuGCCugGa-CGUGGGGuuGUUGu -5'
21492 3' -54.7 NC_004812.1 + 104994 0.66 0.940182
Target:  5'- gC-CGCGGGCCgccgcgGCGCCCCucGCGccccGCGg -3'
miRNA:   3'- gGuGUGCCUGGa-----CGUGGGGu-UGU----UGU- -5'
21492 3' -54.7 NC_004812.1 + 5417 0.66 0.940182
Target:  5'- aCGCgGCGGGCCggggGCcCCCCAGaggGGCGg -3'
miRNA:   3'- gGUG-UGCCUGGa---CGuGGGGUUg--UUGU- -5'
21492 3' -54.7 NC_004812.1 + 128917 0.66 0.935361
Target:  5'- gCGC-CGGcguguGgCUGgGCCCCGGCGGCAc -3'
miRNA:   3'- gGUGuGCC-----UgGACgUGGGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 140899 0.66 0.933868
Target:  5'- aCGCGCGGgggcaucugcccguACCUGcCGCCCgCGGgAACGc -3'
miRNA:   3'- gGUGUGCC--------------UGGAC-GUGGG-GUUgUUGU- -5'
21492 3' -54.7 NC_004812.1 + 152880 0.66 0.940182
Target:  5'- gCGCGCGGcCCgcgccaggUGCGCUCCGcCGGCGc -3'
miRNA:   3'- gGUGUGCCuGG--------ACGUGGGGUuGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 95388 0.66 0.940182
Target:  5'- aCCGC-CGGACa--CACCCCAGCc--- -3'
miRNA:   3'- -GGUGuGCCUGgacGUGGGGUUGuugu -5'
21492 3' -54.7 NC_004812.1 + 87834 0.66 0.935361
Target:  5'- cCCACggGCGuGACCgUGUACCUggagcccuggcaCAGCGACAu -3'
miRNA:   3'- -GGUG--UGC-CUGG-ACGUGGG------------GUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 5822 0.66 0.935361
Target:  5'- gCGCgGCGGGCuCUGCGggCCGGCGGCGc -3'
miRNA:   3'- gGUG-UGCCUG-GACGUggGGUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.