miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 3' -54.7 NC_004812.1 + 461 0.68 0.88052
Target:  5'- cCCGCGCGucCC-GCGCCCCGcguccgcGCGGCc -3'
miRNA:   3'- -GGUGUGCcuGGaCGUGGGGU-------UGUUGu -5'
21492 3' -54.7 NC_004812.1 + 484 0.73 0.653674
Target:  5'- gCGCACGcGCCUGCugCCCGaacucACGGCc -3'
miRNA:   3'- gGUGUGCcUGGACGugGGGU-----UGUUGu -5'
21492 3' -54.7 NC_004812.1 + 629 0.68 0.874054
Target:  5'- gCACGCGGG-CUGCaACCCCGagGCucuGCGu -3'
miRNA:   3'- gGUGUGCCUgGACG-UGGGGU--UGu--UGU- -5'
21492 3' -54.7 NC_004812.1 + 751 0.67 0.919455
Target:  5'- gCCGCGCGcGCCUcGCcUCCCGGCGccGCGg -3'
miRNA:   3'- -GGUGUGCcUGGA-CGuGGGGUUGU--UGU- -5'
21492 3' -54.7 NC_004812.1 + 1398 0.67 0.913673
Target:  5'- cCCGCucuucGCGGcCCg--GCCCCGACGGCGg -3'
miRNA:   3'- -GGUG-----UGCCuGGacgUGGGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 1591 0.71 0.744152
Target:  5'- cCCGCACGGcuccccGCCUccggGCGCCCCGcGCGAgGg -3'
miRNA:   3'- -GGUGUGCC------UGGA----CGUGGGGU-UGUUgU- -5'
21492 3' -54.7 NC_004812.1 + 2086 0.67 0.913673
Target:  5'- gCCGCguccugccuccaGCGGACCUcCGCcgcccgcccgCCCGACGACGg -3'
miRNA:   3'- -GGUG------------UGCCUGGAcGUG----------GGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 2414 0.66 0.935361
Target:  5'- gCgGCGCGG-CCaGC-CCCCAGCGcgcGCAn -3'
miRNA:   3'- -GgUGUGCCuGGaCGuGGGGUUGU---UGU- -5'
21492 3' -54.7 NC_004812.1 + 2442 0.7 0.809346
Target:  5'- -gGCGCGGugCgagUGCGCCUCGccGCGGCGg -3'
miRNA:   3'- ggUGUGCCugG---ACGUGGGGU--UGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 2942 0.69 0.840799
Target:  5'- cCCGCGUGGAgagcaggagcacgcCCUGCGCgCCCAGCGcCGa -3'
miRNA:   3'- -GGUGUGCCU--------------GGACGUG-GGGUUGUuGU- -5'
21492 3' -54.7 NC_004812.1 + 2985 0.67 0.907651
Target:  5'- cCCGCAUGGGCg-GC-CCgucaCCGACAGCGa -3'
miRNA:   3'- -GGUGUGCCUGgaCGuGG----GGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 3409 0.66 0.935361
Target:  5'- gCGC-CGGcguguGgCUGgGCCCCGGCGGCAc -3'
miRNA:   3'- gGUGuGCC-----UgGACgUGGGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 3505 0.69 0.826648
Target:  5'- -gGCGCGGGCCcgggGCcggcgGCCCCGGgGGCGg -3'
miRNA:   3'- ggUGUGCCUGGa---CG-----UGGGGUUgUUGU- -5'
21492 3' -54.7 NC_004812.1 + 3739 0.79 0.31446
Target:  5'- -gGCGCGGGCC-GCGCgCCAGCAGCGg -3'
miRNA:   3'- ggUGUGCCUGGaCGUGgGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 3794 0.73 0.643417
Target:  5'- gCGCACGGcggcgacggcgGCCUcgGCGCCgCCGGCGACGc -3'
miRNA:   3'- gGUGUGCC-----------UGGA--CGUGG-GGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 4184 0.73 0.653674
Target:  5'- gCCACGUGGacGCCgaggGCGCCCCcGCGGCGc -3'
miRNA:   3'- -GGUGUGCC--UGGa---CGUGGGGuUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 4288 0.68 0.866663
Target:  5'- aCCGuCACGGgggacuGCCUGCcgguCCUCGACAugGa -3'
miRNA:   3'- -GGU-GUGCC------UGGACGu---GGGGUUGUugU- -5'
21492 3' -54.7 NC_004812.1 + 4635 0.77 0.401437
Target:  5'- cCCACACGGGCgCggGCGCgCCGGCGGCc -3'
miRNA:   3'- -GGUGUGCCUG-Ga-CGUGgGGUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 4985 0.67 0.924998
Target:  5'- gCGCGCGGgggGCCgUGCGCCgCAgggcgggcggggGCGGCAg -3'
miRNA:   3'- gGUGUGCC---UGG-ACGUGGgGU------------UGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 5417 0.66 0.940182
Target:  5'- aCGCgGCGGGCCggggGCcCCCCAGaggGGCGg -3'
miRNA:   3'- gGUG-UGCCUGGa---CGuGGGGUUg--UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.