miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 3' -54.7 NC_004812.1 + 117325 0.73 0.633151
Target:  5'- gCCGCGCccccGGACCccGgGCCCCGGCGGCc -3'
miRNA:   3'- -GGUGUG----CCUGGa-CgUGGGGUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 67401 0.74 0.581964
Target:  5'- gCCGCGCGGAgCCgGgGCCCCGGCucccaGACGg -3'
miRNA:   3'- -GGUGUGCCU-GGaCgUGGGGUUG-----UUGU- -5'
21492 3' -54.7 NC_004812.1 + 137658 0.74 0.60238
Target:  5'- cCCGgACGGACgagcgGCACCCguACGACAc -3'
miRNA:   3'- -GGUgUGCCUGga---CGUGGGguUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 101044 0.73 0.612625
Target:  5'- gCACGCGGGCCaGCaggGCCCCggUGGCc -3'
miRNA:   3'- gGUGUGCCUGGaCG---UGGGGuuGUUGu -5'
21492 3' -54.7 NC_004812.1 + 120850 0.73 0.612625
Target:  5'- cUCGCGCGGGCCgcgGCcccuCCCCGGCcccGCAg -3'
miRNA:   3'- -GGUGUGCCUGGa--CGu---GGGGUUGu--UGU- -5'
21492 3' -54.7 NC_004812.1 + 32175 0.73 0.612625
Target:  5'- cCCGCGCGGACCggGUGCCuCCGGgccacgucCAGCAc -3'
miRNA:   3'- -GGUGUGCCUGGa-CGUGG-GGUU--------GUUGU- -5'
21492 3' -54.7 NC_004812.1 + 110586 0.73 0.619805
Target:  5'- gCACGCGGACCcgcgGCgguuucacuuccacGCCCCGcccGCAACGg -3'
miRNA:   3'- gGUGUGCCUGGa---CG--------------UGGGGU---UGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 135542 0.73 0.622884
Target:  5'- gCCGcCGCGGACUcGgACCCCGGCcACAg -3'
miRNA:   3'- -GGU-GUGCCUGGaCgUGGGGUUGuUGU- -5'
21492 3' -54.7 NC_004812.1 + 30892 0.73 0.633151
Target:  5'- gCGCGCGGcCCcGCGCCCCGcgGGCAc -3'
miRNA:   3'- gGUGUGCCuGGaCGUGGGGUugUUGU- -5'
21492 3' -54.7 NC_004812.1 + 67281 0.74 0.571807
Target:  5'- uCCGCGuCGGGCC-GgGCCCCGGCGccGCAg -3'
miRNA:   3'- -GGUGU-GCCUGGaCgUGGGGUUGU--UGU- -5'
21492 3' -54.7 NC_004812.1 + 88859 0.74 0.551628
Target:  5'- gUCACGCGcGACggcgagacgCUGCGCCCCAACAc-- -3'
miRNA:   3'- -GGUGUGC-CUG---------GACGUGGGGUUGUugu -5'
21492 3' -54.7 NC_004812.1 + 138692 0.75 0.541619
Target:  5'- cCCgAC-CGGGCCUcGCGCCCgGACGACc -3'
miRNA:   3'- -GG-UGuGCCUGGA-CGUGGGgUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 129247 0.79 0.31446
Target:  5'- -gGCGCGGGCC-GCGCgCCAGCAGCGg -3'
miRNA:   3'- ggUGUGCCUGGaCGUGgGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 130143 0.77 0.401437
Target:  5'- cCCACACGGGCgCggGCGCgCCGGCGGCc -3'
miRNA:   3'- -GGUGUGCCUG-Ga-CGUGgGGUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 96270 0.76 0.46418
Target:  5'- gCGgGCGGGCCUgGCGCCCCcgcGCAACc -3'
miRNA:   3'- gGUgUGCCUGGA-CGUGGGGu--UGUUGu -5'
21492 3' -54.7 NC_004812.1 + 74321 0.76 0.47356
Target:  5'- gCGCGCGGGCCUcgaGCGCCCgAACGucgACGa -3'
miRNA:   3'- gGUGUGCCUGGA---CGUGGGgUUGU---UGU- -5'
21492 3' -54.7 NC_004812.1 + 153878 0.76 0.486849
Target:  5'- gCCGCGCGcGACCUGCGCCgcgccgugcuggccuCCGGCcGCGu -3'
miRNA:   3'- -GGUGUGC-CUGGACGUGG---------------GGUUGuUGU- -5'
21492 3' -54.7 NC_004812.1 + 81208 0.75 0.502248
Target:  5'- aCGCGCGGGCguggaUGC-CCCCGGCGACc -3'
miRNA:   3'- gGUGUGCCUGg----ACGuGGGGUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 125193 0.75 0.52179
Target:  5'- gCGCGCGGGCC--CGCCCCGGCcGCGg -3'
miRNA:   3'- gGUGUGCCUGGacGUGGGGUUGuUGU- -5'
21492 3' -54.7 NC_004812.1 + 95580 0.75 0.538628
Target:  5'- aCCGCACGG-CC-GCGCCCgcgcgcgggcgcggCAGCAGCAa -3'
miRNA:   3'- -GGUGUGCCuGGaCGUGGG--------------GUUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.