miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 3' -54.7 NC_004812.1 + 65409 1.1 0.003466
Target:  5'- gCCACACGGACCUGCACCCCAACAACAc -3'
miRNA:   3'- -GGUGUGCCUGGACGUGGGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 132974 0.84 0.175703
Target:  5'- uCCGCGgGGACCgcGCGCCCCGGCGGCc -3'
miRNA:   3'- -GGUGUgCCUGGa-CGUGGGGUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 7466 0.84 0.175703
Target:  5'- uCCGCGgGGACCgcGCGCCCCGGCGGCc -3'
miRNA:   3'- -GGUGUgCCUGGa-CGUGGGGUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 50111 0.83 0.189497
Target:  5'- cCCGCgccGCGGACCcGCGCCCCAGCcACGg -3'
miRNA:   3'- -GGUG---UGCCUGGaCGUGGGGUUGuUGU- -5'
21492 3' -54.7 NC_004812.1 + 129247 0.79 0.31446
Target:  5'- -gGCGCGGGCC-GCGCgCCAGCAGCGg -3'
miRNA:   3'- ggUGUGCCUGGaCGUGgGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 3739 0.79 0.31446
Target:  5'- -gGCGCGGGCC-GCGCgCCAGCAGCGg -3'
miRNA:   3'- ggUGUGCCUGGaCGUGgGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 75265 0.79 0.336696
Target:  5'- cCCugGCGGGCCUGCGCgCCGugAuCAc -3'
miRNA:   3'- -GGugUGCCUGGACGUGgGGUugUuGU- -5'
21492 3' -54.7 NC_004812.1 + 119864 0.79 0.336696
Target:  5'- aCCACcagcugcggACGGGCCUGCACCCCGGgGu-- -3'
miRNA:   3'- -GGUG---------UGCCUGGACGUGGGGUUgUugu -5'
21492 3' -54.7 NC_004812.1 + 137677 0.79 0.344358
Target:  5'- uCCGCuuccCGGGCCUGCaACCCCGGCuGCu -3'
miRNA:   3'- -GGUGu---GCCUGGACG-UGGGGUUGuUGu -5'
21492 3' -54.7 NC_004812.1 + 60143 0.78 0.384524
Target:  5'- uCCGCGgGGGCCgggucgGC-CCCCAGCAGCc -3'
miRNA:   3'- -GGUGUgCCUGGa-----CGuGGGGUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 4635 0.77 0.401437
Target:  5'- cCCACACGGGCgCggGCGCgCCGGCGGCc -3'
miRNA:   3'- -GGUGUGCCUG-Ga-CGUGgGGUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 130143 0.77 0.401437
Target:  5'- cCCACACGGGCgCggGCGCgCCGGCGGCc -3'
miRNA:   3'- -GGUGUGCCUG-Ga-CGUGgGGUUGUUGu -5'
21492 3' -54.7 NC_004812.1 + 116415 0.77 0.418815
Target:  5'- uCCGCuGCGGGCCcGCGCCCUGGgGACGg -3'
miRNA:   3'- -GGUG-UGCCUGGaCGUGGGGUUgUUGU- -5'
21492 3' -54.7 NC_004812.1 + 122762 0.77 0.418815
Target:  5'- gCCACGCGGACgCUGCggaacACCCCGGgGugGa -3'
miRNA:   3'- -GGUGUGCCUG-GACG-----UGGGGUUgUugU- -5'
21492 3' -54.7 NC_004812.1 + 97902 0.77 0.427674
Target:  5'- uCCACGC-GACgCUGUuCCCCAACGGCAa -3'
miRNA:   3'- -GGUGUGcCUG-GACGuGGGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 138441 0.77 0.427674
Target:  5'- aCCGCGgGGACCcGC-UCCCGACGGCGg -3'
miRNA:   3'- -GGUGUgCCUGGaCGuGGGGUUGUUGU- -5'
21492 3' -54.7 NC_004812.1 + 110341 0.77 0.436642
Target:  5'- cCCGCGCGGAuCCUGCcgcGCCCCGAgAuCGa -3'
miRNA:   3'- -GGUGUGCCU-GGACG---UGGGGUUgUuGU- -5'
21492 3' -54.7 NC_004812.1 + 96270 0.76 0.46418
Target:  5'- gCGgGCGGGCCUgGCGCCCCcgcGCAACc -3'
miRNA:   3'- gGUgUGCCUGGA-CGUGGGGu--UGUUGu -5'
21492 3' -54.7 NC_004812.1 + 74321 0.76 0.47356
Target:  5'- gCGCGCGGGCCUcgaGCGCCCgAACGucgACGa -3'
miRNA:   3'- gGUGUGCCUGGA---CGUGGGgUUGU---UGU- -5'
21492 3' -54.7 NC_004812.1 + 153878 0.76 0.486849
Target:  5'- gCCGCGCGcGACCUGCGCCgcgccgugcuggccuCCGGCcGCGu -3'
miRNA:   3'- -GGUGUGC-CUGGACGUGG---------------GGUUGuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.