miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 5' -58.1 NC_004812.1 + 93116 0.66 0.833818
Target:  5'- cGGUGUcGGGCGGCGgcguCUGCGUGAcGUu -3'
miRNA:   3'- -UCGCA-CCUGCUGCac--GACGCGCU-CAc -5'
21492 5' -58.1 NC_004812.1 + 156382 0.66 0.849776
Target:  5'- gAGCG-GGGCcGCGggggccgggGCUGCGCGAc-- -3'
miRNA:   3'- -UCGCaCCUGcUGCa--------CGACGCGCUcac -5'
21492 5' -58.1 NC_004812.1 + 41732 0.66 0.849776
Target:  5'- cGGCGUGGugGugACGggGgUGCGCGuGc- -3'
miRNA:   3'- -UCGCACCugC--UGCa-CgACGCGCuCac -5'
21492 5' -58.1 NC_004812.1 + 64145 0.66 0.825569
Target:  5'- cGCGaucggGGACGGCGgcgcggcggGCUccGCGCGGGa- -3'
miRNA:   3'- uCGCa----CCUGCUGCa--------CGA--CGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 149085 0.66 0.833818
Target:  5'- gGGCGggagGGGCGGCGcgccGCgggGCGgGGGUu -3'
miRNA:   3'- -UCGCa---CCUGCUGCa---CGa--CGCgCUCAc -5'
21492 5' -58.1 NC_004812.1 + 57246 0.66 0.808569
Target:  5'- gAGCGUGGGCGG-GcGCUGgGgGGGg- -3'
miRNA:   3'- -UCGCACCUGCUgCaCGACgCgCUCac -5'
21492 5' -58.1 NC_004812.1 + 81103 0.66 0.808569
Target:  5'- uGGCGgugcGGGCGGCGUGgUGgGCc-GUGg -3'
miRNA:   3'- -UCGCa---CCUGCUGCACgACgCGcuCAC- -5'
21492 5' -58.1 NC_004812.1 + 59656 0.66 0.817151
Target:  5'- uGGUGUGGGCGcagGCGUGCcGCGUcuccaggucgcaGAGg- -3'
miRNA:   3'- -UCGCACCUGC---UGCACGaCGCG------------CUCac -5'
21492 5' -58.1 NC_004812.1 + 72239 0.66 0.817151
Target:  5'- cGGCG-GGGCGucCGgucgGCggGCGCGAGa- -3'
miRNA:   3'- -UCGCaCCUGCu-GCa---CGa-CGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 60667 0.66 0.849776
Target:  5'- gAGCuccUGGAUGACGagccGCUGCGuCGGGa- -3'
miRNA:   3'- -UCGc--ACCUGCUGCa---CGACGC-GCUCac -5'
21492 5' -58.1 NC_004812.1 + 45626 0.66 0.841889
Target:  5'- gGGCGcggGGACGGcCGcGCUGCccgcggcgauaGCGAGUc -3'
miRNA:   3'- -UCGCa--CCUGCU-GCaCGACG-----------CGCUCAc -5'
21492 5' -58.1 NC_004812.1 + 20290 0.66 0.833818
Target:  5'- gGGgGUGGGCGGCGcGCcgGCGCa---- -3'
miRNA:   3'- -UCgCACCUGCUGCaCGa-CGCGcucac -5'
21492 5' -58.1 NC_004812.1 + 72974 0.66 0.817151
Target:  5'- cGCa-GGGCGGCGUcggcgccccGCUcGCGCGAGUc -3'
miRNA:   3'- uCGcaCCUGCUGCA---------CGA-CGCGCUCAc -5'
21492 5' -58.1 NC_004812.1 + 125319 0.66 0.849776
Target:  5'- cGCGUGGGgGGCGggGC-GCcGCGGGa- -3'
miRNA:   3'- uCGCACCUgCUGCa-CGaCG-CGCUCac -5'
21492 5' -58.1 NC_004812.1 + 36153 0.66 0.817151
Target:  5'- uGGcCGUGG-CGGCGcaggGgUGCGCGGGg- -3'
miRNA:   3'- -UC-GCACCuGCUGCa---CgACGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 62849 0.66 0.841889
Target:  5'- gAG-GUGGACGugGUcGaCcGCGcCGAGUGu -3'
miRNA:   3'- -UCgCACCUGCugCA-C-GaCGC-GCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 114427 0.66 0.849776
Target:  5'- cGCG-GGugGACG-GC-GCGUGcGUGg -3'
miRNA:   3'- uCGCaCCugCUGCaCGaCGCGCuCAC- -5'
21492 5' -58.1 NC_004812.1 + 94630 0.66 0.825569
Target:  5'- gGGCGuUGGgaccgGCGACGaggGCgcggGCGCGAGc- -3'
miRNA:   3'- -UCGC-ACC-----UGCUGCa--CGa---CGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 6901 0.66 0.84109
Target:  5'- uGUGUGGugGucucgggGCGcGCUGCGCccgcggggccgGGGUGg -3'
miRNA:   3'- uCGCACCugC-------UGCaCGACGCG-----------CUCAC- -5'
21492 5' -58.1 NC_004812.1 + 122443 0.66 0.833818
Target:  5'- cGGCGUcuccucGGGCGGCG-GggGCGCGGGc- -3'
miRNA:   3'- -UCGCA------CCUGCUGCaCgaCGCGCUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.