miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 5' -58.1 NC_004812.1 + 65443 1.07 0.002519
Target:  5'- gAGCGUGGACGACGUGCUGCGCGAGUGc -3'
miRNA:   3'- -UCGCACCUGCUGCACGACGCGCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 9999 0.76 0.286882
Target:  5'- cGCGUGGAgGAgGUGCUGCcgccccGCGAGg- -3'
miRNA:   3'- uCGCACCUgCUgCACGACG------CGCUCac -5'
21492 5' -58.1 NC_004812.1 + 29910 0.75 0.358872
Target:  5'- gGGCGUGGugGCGGCGgcgacgGCgacgGCGCGAGg- -3'
miRNA:   3'- -UCGCACC--UGCUGCa-----CGa---CGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 82052 0.74 0.40776
Target:  5'- cGCGaGGACGugGUG--GCGCGGGUGc -3'
miRNA:   3'- uCGCaCCUGCugCACgaCGCGCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 144146 0.73 0.451545
Target:  5'- uGGCGUGGGCGAUcgGUGC-GUGUGuGUGc -3'
miRNA:   3'- -UCGCACCUGCUG--CACGaCGCGCuCAC- -5'
21492 5' -58.1 NC_004812.1 + 98308 0.73 0.451545
Target:  5'- cGCGUGGACGACGaUGUU-UGCGAGcUGc -3'
miRNA:   3'- uCGCACCUGCUGC-ACGAcGCGCUC-AC- -5'
21492 5' -58.1 NC_004812.1 + 134463 0.72 0.479018
Target:  5'- cGCGUGGACGcgcugcucauGCGccUGUUGCGCGcGUGc -3'
miRNA:   3'- uCGCACCUGC----------UGC--ACGACGCGCuCAC- -5'
21492 5' -58.1 NC_004812.1 + 73529 0.72 0.503474
Target:  5'- cGCGUGGAUGACGcgacgcucaccccGCUGaCGCGAGc- -3'
miRNA:   3'- uCGCACCUGCUGCa------------CGAC-GCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 26179 0.71 0.526519
Target:  5'- cAGCGUcgccGGGCGACGgggGCgGCGCGuAGUc -3'
miRNA:   3'- -UCGCA----CCUGCUGCa--CGaCGCGC-UCAc -5'
21492 5' -58.1 NC_004812.1 + 22753 0.71 0.536238
Target:  5'- cGGCGUGGugGACcUGgUGCGUccaGGUGg -3'
miRNA:   3'- -UCGCACCugCUGcACgACGCGc--UCAC- -5'
21492 5' -58.1 NC_004812.1 + 131410 0.71 0.54602
Target:  5'- cGCGUccuGGGCgGACGUGC-GCGCGGGc- -3'
miRNA:   3'- uCGCA---CCUG-CUGCACGaCGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 97392 0.71 0.555857
Target:  5'- gGGCGUGGGCGcGCGgGCcucggGCGCGuacuGGUGg -3'
miRNA:   3'- -UCGCACCUGC-UGCaCGa----CGCGC----UCAC- -5'
21492 5' -58.1 NC_004812.1 + 145977 0.71 0.555857
Target:  5'- gGGC-UGGGgGcCGUGCUGUGCGGGg- -3'
miRNA:   3'- -UCGcACCUgCuGCACGACGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 137856 0.71 0.555857
Target:  5'- uGGCGacGGACGAgGUGC-GCcGCGAGUa -3'
miRNA:   3'- -UCGCa-CCUGCUgCACGaCG-CGCUCAc -5'
21492 5' -58.1 NC_004812.1 + 17340 0.71 0.565745
Target:  5'- gGGCGggGGugGugGUGgggGCGgGGGUGg -3'
miRNA:   3'- -UCGCa-CCugCugCACga-CGCgCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 17376 0.71 0.565745
Target:  5'- gGGCGggGGugGugGUGgggGCGgGGGUGg -3'
miRNA:   3'- -UCGCa-CCugCugCACga-CGCgCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 70861 0.71 0.565745
Target:  5'- gAGaCGcGGGgGGCGUgGCUGCGCGGGg- -3'
miRNA:   3'- -UC-GCaCCUgCUGCA-CGACGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 17412 0.71 0.565745
Target:  5'- gGGCGggGGugGugGUGgggGCGgGGGUGg -3'
miRNA:   3'- -UCGCa-CCugCugCACga-CGCgCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 18827 0.7 0.595656
Target:  5'- uGCGgcGGGCGGCG-GUUGCGCGccgcccGGUGg -3'
miRNA:   3'- uCGCa-CCUGCUGCaCGACGCGC------UCAC- -5'
21492 5' -58.1 NC_004812.1 + 66570 0.7 0.605686
Target:  5'- cGGCGgagGGACGAgCG-GCUGCGCGu--- -3'
miRNA:   3'- -UCGCa--CCUGCU-GCaCGACGCGCucac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.