miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 5' -58.1 NC_004812.1 + 3082 0.66 0.849776
Target:  5'- gGGCGgcgGGACGACG-GCguggGgGgGAGg- -3'
miRNA:   3'- -UCGCa--CCUGCUGCaCGa---CgCgCUCac -5'
21492 5' -58.1 NC_004812.1 + 4792 0.68 0.725372
Target:  5'- gGGCG-GGGCGAgggcugGUGCggGCGCGGGg- -3'
miRNA:   3'- -UCGCaCCUGCUg-----CACGa-CGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 6103 0.67 0.763504
Target:  5'- cGGCGggaacggGGGCGACGgcggcggGCUGC-CGGGg- -3'
miRNA:   3'- -UCGCa------CCUGCUGCa------CGACGcGCUCac -5'
21492 5' -58.1 NC_004812.1 + 6536 0.67 0.763504
Target:  5'- gGGCGgggGGcCGAgGggGCUGCcGCGAGUc -3'
miRNA:   3'- -UCGCa--CCuGCUgCa-CGACG-CGCUCAc -5'
21492 5' -58.1 NC_004812.1 + 6901 0.66 0.84109
Target:  5'- uGUGUGGugGucucgggGCGcGCUGCGCccgcggggccgGGGUGg -3'
miRNA:   3'- uCGCACCugC-------UGCaCGACGCG-----------CUCAC- -5'
21492 5' -58.1 NC_004812.1 + 7681 0.67 0.799833
Target:  5'- gAGCGggGGugGGCGg---GCGCGGGg- -3'
miRNA:   3'- -UCGCa-CCugCUGCacgaCGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 7772 0.69 0.655981
Target:  5'- uGCGUGcGCGcCGUGCgGCGCGGccGUGu -3'
miRNA:   3'- uCGCACcUGCuGCACGaCGCGCU--CAC- -5'
21492 5' -58.1 NC_004812.1 + 9999 0.76 0.286882
Target:  5'- cGCGUGGAgGAgGUGCUGCcgccccGCGAGg- -3'
miRNA:   3'- uCGCACCUgCUgCACGACG------CGCUCac -5'
21492 5' -58.1 NC_004812.1 + 10741 0.7 0.625798
Target:  5'- gGGCGgcaacgGcGGCGACGcGcCUGCGCGAGa- -3'
miRNA:   3'- -UCGCa-----C-CUGCUGCaC-GACGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 11917 0.67 0.772777
Target:  5'- uGGgGUGGGgGugGggcgGCgggGCGgGGGUGg -3'
miRNA:   3'- -UCgCACCUgCugCa---CGa--CGCgCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 16513 0.66 0.817151
Target:  5'- gGGCGcggGGGCGAUGcGCUcacGCGUGGGa- -3'
miRNA:   3'- -UCGCa--CCUGCUGCaCGA---CGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 16642 0.66 0.841889
Target:  5'- gGGCGUGGGCGGCcagGCUGaGCaGGa- -3'
miRNA:   3'- -UCGCACCUGCUGca-CGACgCGcUCac -5'
21492 5' -58.1 NC_004812.1 + 16860 0.66 0.841889
Target:  5'- gGGCGggccccgGGAcCGGCGUgGCccGuCGCGGGUGg -3'
miRNA:   3'- -UCGCa------CCU-GCUGCA-CGa-C-GCGCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 17340 0.71 0.565745
Target:  5'- gGGCGggGGugGugGUGgggGCGgGGGUGg -3'
miRNA:   3'- -UCGCa-CCugCugCACga-CGCgCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 17376 0.71 0.565745
Target:  5'- gGGCGggGGugGugGUGgggGCGgGGGUGg -3'
miRNA:   3'- -UCGCa-CCugCugCACga-CGCgCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 17412 0.71 0.565745
Target:  5'- gGGCGggGGugGugGUGgggGCGgGGGUGg -3'
miRNA:   3'- -UCGCa-CCugCugCACga-CGCgCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 17766 0.69 0.666015
Target:  5'- cGGUGUGGGCgGGCGUGg-GgGCGAGa- -3'
miRNA:   3'- -UCGCACCUG-CUGCACgaCgCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 18827 0.7 0.595656
Target:  5'- uGCGgcGGGCGGCG-GUUGCGCGccgcccGGUGg -3'
miRNA:   3'- uCGCa-CCUGCUGCaCGACGCGC------UCAC- -5'
21492 5' -58.1 NC_004812.1 + 19135 0.7 0.635864
Target:  5'- cGGCGUGGGCGGCcaGCgccGCGgGGGg- -3'
miRNA:   3'- -UCGCACCUGCUGcaCGa--CGCgCUCac -5'
21492 5' -58.1 NC_004812.1 + 20290 0.66 0.833818
Target:  5'- gGGgGUGGGCGGCGcGCcgGCGCa---- -3'
miRNA:   3'- -UCgCACCUGCUGCaCGa-CGCGcucac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.