miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21492 5' -58.1 NC_004812.1 + 4792 0.68 0.725372
Target:  5'- gGGCG-GGGCGAgggcugGUGCggGCGCGGGg- -3'
miRNA:   3'- -UCGCaCCUGCUg-----CACGa-CGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 100453 0.69 0.676023
Target:  5'- uGCGaGGGCGugGUGCggGCGUaGAGg- -3'
miRNA:   3'- uCGCaCCUGCugCACGa-CGCG-CUCac -5'
21492 5' -58.1 NC_004812.1 + 100882 0.69 0.676023
Target:  5'- gGGCGUcccGGaacGCGGgGUGCgccgaGCGCGGGUGc -3'
miRNA:   3'- -UCGCA---CC---UGCUgCACGa----CGCGCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 24851 0.69 0.695926
Target:  5'- cGCGccgcGGGCGGCGcgGCUGCGgGGGc- -3'
miRNA:   3'- uCGCa---CCUGCUGCa-CGACGCgCUCac -5'
21492 5' -58.1 NC_004812.1 + 84717 0.68 0.705804
Target:  5'- cGCGUcGGACGGCG-GCUccgaGCGCGccGUGc -3'
miRNA:   3'- uCGCA-CCUGCUGCaCGA----CGCGCu-CAC- -5'
21492 5' -58.1 NC_004812.1 + 115594 0.68 0.705804
Target:  5'- cGCGgcGGGCGGCGgGCUGUagGgGGGUGg -3'
miRNA:   3'- uCGCa-CCUGCUGCaCGACG--CgCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 37269 0.68 0.715623
Target:  5'- cAGC-UGGGCGGgGUGCa--GCGGGUGg -3'
miRNA:   3'- -UCGcACCUGCUgCACGacgCGCUCAC- -5'
21492 5' -58.1 NC_004812.1 + 155418 0.68 0.715623
Target:  5'- gGGCGUGGugGCGGCGgcgacgGCgacgGCGaCGAGg- -3'
miRNA:   3'- -UCGCACC--UGCUGCa-----CGa---CGC-GCUCac -5'
21492 5' -58.1 NC_004812.1 + 138416 0.68 0.722455
Target:  5'- cGCGUGGACG-CGggggGCUGCcgGCGccccaucgcccucaGGUGg -3'
miRNA:   3'- uCGCACCUGCuGCa---CGACG--CGC--------------UCAC- -5'
21492 5' -58.1 NC_004812.1 + 17766 0.69 0.666015
Target:  5'- cGGUGUGGGCgGGCGUGg-GgGCGAGa- -3'
miRNA:   3'- -UCGCACCUG-CUGCACgaCgCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 7772 0.69 0.655981
Target:  5'- uGCGUGcGCGcCGUGCgGCGCGGccGUGu -3'
miRNA:   3'- uCGCACcUGCuGCACGaCGCGCU--CAC- -5'
21492 5' -58.1 NC_004812.1 + 19135 0.7 0.635864
Target:  5'- cGGCGUGGGCGGCcaGCgccGCGgGGGg- -3'
miRNA:   3'- -UCGCACCUGCUGcaCGa--CGCgCUCac -5'
21492 5' -58.1 NC_004812.1 + 144146 0.73 0.451545
Target:  5'- uGGCGUGGGCGAUcgGUGC-GUGUGuGUGc -3'
miRNA:   3'- -UCGCACCUGCUG--CACGaCGCGCuCAC- -5'
21492 5' -58.1 NC_004812.1 + 26179 0.71 0.526519
Target:  5'- cAGCGUcgccGGGCGACGgggGCgGCGCGuAGUc -3'
miRNA:   3'- -UCGCA----CCUGCUGCa--CGaCGCGC-UCAc -5'
21492 5' -58.1 NC_004812.1 + 22753 0.71 0.536238
Target:  5'- cGGCGUGGugGACcUGgUGCGUccaGGUGg -3'
miRNA:   3'- -UCGCACCugCUGcACgACGCGc--UCAC- -5'
21492 5' -58.1 NC_004812.1 + 145977 0.71 0.555857
Target:  5'- gGGC-UGGGgGcCGUGCUGUGCGGGg- -3'
miRNA:   3'- -UCGcACCUgCuGCACGACGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 97392 0.71 0.555857
Target:  5'- gGGCGUGGGCGcGCGgGCcucggGCGCGuacuGGUGg -3'
miRNA:   3'- -UCGCACCUGC-UGCaCGa----CGCGC----UCAC- -5'
21492 5' -58.1 NC_004812.1 + 70861 0.71 0.565745
Target:  5'- gAGaCGcGGGgGGCGUgGCUGCGCGGGg- -3'
miRNA:   3'- -UC-GCaCCUgCUGCA-CGACGCGCUCac -5'
21492 5' -58.1 NC_004812.1 + 66570 0.7 0.605686
Target:  5'- cGGCGgagGGACGAgCG-GCUGCGCGu--- -3'
miRNA:   3'- -UCGCa--CCUGCU-GCaCGACGCGCucac -5'
21492 5' -58.1 NC_004812.1 + 140847 0.7 0.635864
Target:  5'- uGGCGaGGaACGACGUGCcgcagGCGCGcaaggcgcgggGGUGg -3'
miRNA:   3'- -UCGCaCC-UGCUGCACGa----CGCGC-----------UCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.