miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 43720 0.65 0.772296
Target:  5'- gGCGGCUUCGggaacgaacGCGCGGaugaGCGCg -3'
miRNA:   3'- aCGCCGAAGCaguc-----CGCGUCga--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 94285 0.66 0.755321
Target:  5'- cGCGGCccgggCGUgcgccUGGGUGCgcuuggucgccGGCUGCGCg -3'
miRNA:   3'- aCGCCGaa---GCA-----GUCCGCG-----------UCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 4507 0.66 0.745736
Target:  5'- gGCGGCaugcugUUCGaccaGGGCGCGcuGCUGgGCg -3'
miRNA:   3'- aCGCCG------AAGCag--UCCGCGU--CGACgUG- -5'
21499 3' -59.1 NC_004812.1 + 66556 0.66 0.736053
Target:  5'- cGCugGGCUccagUCGgcggaGGGacgaGCGGCUGCGCg -3'
miRNA:   3'- aCG--CCGA----AGCag---UCCg---CGUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 74062 0.66 0.755321
Target:  5'- gGCGGCagCGgCGGGCGCGcGCggGC-Cg -3'
miRNA:   3'- aCGCCGaaGCaGUCCGCGU-CGa-CGuG- -5'
21499 3' -59.1 NC_004812.1 + 114838 0.66 0.736053
Target:  5'- aGCGGC--CG--AGGCGCGGC-GCGCc -3'
miRNA:   3'- aCGCCGaaGCagUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 32487 0.66 0.736053
Target:  5'- cGCGGCc-CGUCGgcGGCGUaccgcguugucGGCgGCACg -3'
miRNA:   3'- aCGCCGaaGCAGU--CCGCG-----------UCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 145531 0.66 0.768556
Target:  5'- gGCGGCUcgcggcgccccgguUCGcgcuggucccggggUCGGGCGCcaccGGCgGCGCc -3'
miRNA:   3'- aCGCCGA--------------AGC--------------AGUCCGCG----UCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 95945 0.66 0.754367
Target:  5'- aGCGGC-UCGUCAuccaggagcucacGGuCGCgcgccaggGGCUGUACc -3'
miRNA:   3'- aCGCCGaAGCAGU-------------CC-GCG--------UCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 110360 0.66 0.755321
Target:  5'- cGCGGgUgaUCcaaCAGGCGguGCUGCu- -3'
miRNA:   3'- aCGCCgA--AGca-GUCCGCguCGACGug -5'
21499 3' -59.1 NC_004812.1 + 76120 0.66 0.755321
Target:  5'- gGCGGCcucgagcUCGUCGGcGCGCcGCcGCGu -3'
miRNA:   3'- aCGCCGa------AGCAGUC-CGCGuCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 129218 0.66 0.736053
Target:  5'- gGCGGCggCGgcgCcGGCGgAGC-GCACc -3'
miRNA:   3'- aCGCCGaaGCa--GuCCGCgUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 76822 0.66 0.72628
Target:  5'- gGCGGCgcgcaccucCGg-GGGCGCGcCUGCGCg -3'
miRNA:   3'- aCGCCGaa-------GCagUCCGCGUcGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 106494 0.66 0.736053
Target:  5'- cGUGGCUggggCG-CGGGUccGCGGCgcgggGCGCc -3'
miRNA:   3'- aCGCCGAa---GCaGUCCG--CGUCGa----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 44350 0.66 0.73313
Target:  5'- aGCGGCgcgCGggCaaagggcgugcccgGGGCGCAGCccgcgGCGCc -3'
miRNA:   3'- aCGCCGaa-GCa-G--------------UCCGCGUCGa----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 4347 0.66 0.72628
Target:  5'- cGUGGUgcUCGUgGGGCGC-GCgUGCAa -3'
miRNA:   3'- aCGCCGa-AGCAgUCCGCGuCG-ACGUg -5'
21499 3' -59.1 NC_004812.1 + 126973 0.66 0.745736
Target:  5'- gGCGGCgacgccggCGUCcucggcGGGCGgCGGCggaGCGCc -3'
miRNA:   3'- aCGCCGaa------GCAG------UCCGC-GUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 128903 0.66 0.736053
Target:  5'- gGCGGCggCGgaGGGCGCcggcguguGGCUGgGCc -3'
miRNA:   3'- aCGCCGaaGCagUCCGCG--------UCGACgUG- -5'
21499 3' -59.1 NC_004812.1 + 128982 0.66 0.745736
Target:  5'- gGCGGUcgcgcCGUCA-GCGCGGCgggccgcggGCGCg -3'
miRNA:   3'- aCGCCGaa---GCAGUcCGCGUCGa--------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 46306 0.66 0.745736
Target:  5'- cGCGGCgggccgCG-CGGGCGaCAGCcGC-Cg -3'
miRNA:   3'- aCGCCGaa----GCaGUCCGC-GUCGaCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.