miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 43 0.79 0.150063
Target:  5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 571 0.74 0.317751
Target:  5'- cGCGGCcgCGUggagccgCGGGCGCGGCUccgguaGCGCg -3'
miRNA:   3'- aCGCCGaaGCA-------GUCCGCGUCGA------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 1465 0.66 0.745736
Target:  5'- gGCGGCgacgccggCGUCcucggcGGGCGgCGGCggaGCGCc -3'
miRNA:   3'- aCGCCGaa------GCAG------UCCGC-GUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 2187 0.68 0.615426
Target:  5'- gGCGGCgucgUCGUCGucGGCgaGCAGCgUGuCGCc -3'
miRNA:   3'- aCGCCGa---AGCAGU--CCG--CGUCG-AC-GUG- -5'
21499 3' -59.1 NC_004812.1 + 2253 0.69 0.594107
Target:  5'- gGCGGCgggguccgCGUCGGcguccgcGCGCAGCacgagcgGCGCg -3'
miRNA:   3'- aCGCCGaa------GCAGUC-------CGCGUCGa------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 2350 0.74 0.311304
Target:  5'- gGCGGCagggCGUCGGGCcCGGC-GCGCg -3'
miRNA:   3'- aCGCCGaa--GCAGUCCGcGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 2418 0.68 0.626619
Target:  5'- cGCGGCcagcccccagcgcgCG-CAGGCGCGGUgcgagUGCGCc -3'
miRNA:   3'- aCGCCGaa------------GCaGUCCGCGUCG-----ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 2465 0.67 0.716427
Target:  5'- cGCGGCggaaGUCcgGGGCGCcGGCgGCGg -3'
miRNA:   3'- aCGCCGaag-CAG--UCCGCG-UCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 2517 0.7 0.502917
Target:  5'- gGCGGCgcggcCGUCGagcgcgggcagcacGGCGCGGCgGUACu -3'
miRNA:   3'- aCGCCGaa---GCAGU--------------CCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 2630 0.73 0.356169
Target:  5'- cGCGGCc----CAGGCGCGGCggcgGCGCg -3'
miRNA:   3'- aCGCCGaagcaGUCCGCGUCGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3017 0.7 0.515483
Target:  5'- gGCGGCcgUGUCGGGCccgcagagGCGGUUGCcCa -3'
miRNA:   3'- aCGCCGaaGCAGUCCG--------CGUCGACGuG- -5'
21499 3' -59.1 NC_004812.1 + 3197 0.7 0.48669
Target:  5'- gGCGGCggCG-C-GGCGCAGCgggcccgagGCGCg -3'
miRNA:   3'- aCGCCGaaGCaGuCCGCGUCGa--------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3244 0.67 0.686477
Target:  5'- cGCGGCcggagccgggcUCGggCGGGcCGCAGC-GCGCg -3'
miRNA:   3'- aCGCCGa----------AGCa-GUCC-GCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 3395 0.66 0.736053
Target:  5'- gGCGGCggCGgaGGGCGCcggcguguGGCUGgGCc -3'
miRNA:   3'- aCGCCGaaGCagUCCGCG--------UCGACgUG- -5'
21499 3' -59.1 NC_004812.1 + 3474 0.66 0.745736
Target:  5'- gGCGGUcgcgcCGUCA-GCGCGGCgggccgcggGCGCg -3'
miRNA:   3'- aCGCCGaa---GCAGUcCGCGUCGa--------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3587 0.69 0.585004
Target:  5'- gGCGGCggCGggCGGGCGCgccggcgaggAGCUcuuGCGCu -3'
miRNA:   3'- aCGCCGaaGCa-GUCCGCG----------UCGA---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 3710 0.66 0.736053
Target:  5'- gGCGGCggCGgcgCcGGCGgAGC-GCACc -3'
miRNA:   3'- aCGCCGaaGCa--GuCCGCgUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 3876 0.74 0.314157
Target:  5'- gUGCGGCgcagcUCGcgcagccagaggcgCGGGCGCGGCgGCGCg -3'
miRNA:   3'- -ACGCCGa----AGCa-------------GUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 4147 0.71 0.449537
Target:  5'- gGCGGC--CGcCAGGCgGC-GCUGCGCg -3'
miRNA:   3'- aCGCCGaaGCaGUCCG-CGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 4216 0.74 0.297334
Target:  5'- cGCGGCggCGUCGGGCucggggGCGGCgGCGg -3'
miRNA:   3'- aCGCCGaaGCAGUCCG------CGUCGaCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.