miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 125216 0.71 0.449537
Target:  5'- gGCGGCcgugagUUCGggcagCAGGCGCGuGC-GCACg -3'
miRNA:   3'- aCGCCG------AAGCa----GUCCGCGU-CGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 128138 0.73 0.356169
Target:  5'- cGCGGCc----CAGGCGCGGCggcgGCGCg -3'
miRNA:   3'- aCGCCGaagcaGUCCGCGUCGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 55873 0.73 0.372101
Target:  5'- aGgGGCgUCGUCAGGUGUGGUcguaGCACg -3'
miRNA:   3'- aCgCCGaAGCAGUCCGCGUCGa---CGUG- -5'
21499 3' -59.1 NC_004812.1 + 24844 0.72 0.380247
Target:  5'- cGCGGCacgCGcCGcgggcGGCGCGGCUGCGg -3'
miRNA:   3'- aCGCCGaa-GCaGU-----CCGCGUCGACGUg -5'
21499 3' -59.1 NC_004812.1 + 113055 0.72 0.405391
Target:  5'- cGCGGCcggCGUCGGcCGCGGCgGCAg -3'
miRNA:   3'- aCGCCGaa-GCAGUCcGCGUCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 75825 0.72 0.414001
Target:  5'- gGCGGCagCGcCGGGUGguGCUGguCu -3'
miRNA:   3'- aCGCCGaaGCaGUCCGCguCGACguG- -5'
21499 3' -59.1 NC_004812.1 + 129916 0.72 0.414001
Target:  5'- gGCGGCcauggCGUagccCAGGUGCGGCacgGCGCg -3'
miRNA:   3'- aCGCCGaa---GCA----GUCCGCGUCGa--CGUG- -5'
21499 3' -59.1 NC_004812.1 + 117627 0.72 0.422724
Target:  5'- gGCGGCgcgggcCGcCGGGCGCGGCgggGuCGCg -3'
miRNA:   3'- aCGCCGaa----GCaGUCCGCGUCGa--C-GUG- -5'
21499 3' -59.1 NC_004812.1 + 53004 0.71 0.440494
Target:  5'- gGCGGCUguagcaCGUCccgGGGCGC-GCggGCACg -3'
miRNA:   3'- aCGCCGAa-----GCAG---UCCGCGuCGa-CGUG- -5'
21499 3' -59.1 NC_004812.1 + 571 0.74 0.317751
Target:  5'- cGCGGCcgCGUggagccgCGGGCGCGGCUccgguaGCGCg -3'
miRNA:   3'- aCGCCGaaGCA-------GUCCGCGUCGA------CGUG- -5'
21499 3' -59.1 NC_004812.1 + 129384 0.74 0.314157
Target:  5'- gUGCGGCgcagcUCGcgcagccagaggcgCGGGCGCGGCgGCGCg -3'
miRNA:   3'- -ACGCCGa----AGCa-------------GUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 100513 0.74 0.314157
Target:  5'- aGCGGCguguaggcgcccaCGUCGGGCGCGGCgagGC-Cg -3'
miRNA:   3'- aCGCCGaa-----------GCAGUCCGCGUCGa--CGuG- -5'
21499 3' -59.1 NC_004812.1 + 156453 0.79 0.150063
Target:  5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 32405 0.77 0.202787
Target:  5'- cGCGGCcUCGgucgccgccgCGGGCGCGGCcGCGCc -3'
miRNA:   3'- aCGCCGaAGCa---------GUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 149006 0.76 0.229153
Target:  5'- gUGCGGCgg-GcCGGGCGCGGCgGCGCc -3'
miRNA:   3'- -ACGCCGaagCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 55455 0.76 0.229153
Target:  5'- cGCGGC--CGUCAGGuCGCAGaaGCGCa -3'
miRNA:   3'- aCGCCGaaGCAGUCC-GCGUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 129725 0.75 0.270866
Target:  5'- cGCGGCggCGUCGGGCcggggGCGGCgGCGg -3'
miRNA:   3'- aCGCCGaaGCAGUCCG-----CGUCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 98434 0.74 0.304258
Target:  5'- gGCGGCcgCGgggcggCAGGCGCGGggGCGCc -3'
miRNA:   3'- aCGCCGaaGCa-----GUCCGCGUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 112794 0.74 0.311304
Target:  5'- gGCGGCUccccCGUCGGGCGUgugGGC-GCGCc -3'
miRNA:   3'- aCGCCGAa---GCAGUCCGCG---UCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 127858 0.74 0.311304
Target:  5'- gGCGGCagggCGUCGGGCcCGGC-GCGCg -3'
miRNA:   3'- aCGCCGaa--GCAGUCCGcGUCGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.