miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 3' -59.1 NC_004812.1 + 63586 1.09 0.001116
Target:  5'- cUGCGGCUUCGUCAGGCGCAGCUGCACg -3'
miRNA:   3'- -ACGCCGAAGCAGUCCGCGUCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 71324 0.84 0.074129
Target:  5'- cGCGGCUUCGUgGGGC-CcGCUGCACa -3'
miRNA:   3'- aCGCCGAAGCAgUCCGcGuCGACGUG- -5'
21499 3' -59.1 NC_004812.1 + 30944 0.79 0.150063
Target:  5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 43 0.79 0.150063
Target:  5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 156453 0.79 0.150063
Target:  5'- cGCGGCgggcCG-CGGGCGCGGCgGCGCg -3'
miRNA:   3'- aCGCCGaa--GCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 43849 0.79 0.157891
Target:  5'- cGCGGCgccgaCGUcCGGGCGCGGCgGCGCc -3'
miRNA:   3'- aCGCCGaa---GCA-GUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 32405 0.77 0.202787
Target:  5'- cGCGGCcUCGgucgccgccgCGGGCGCGGCcGCGCc -3'
miRNA:   3'- aCGCCGaAGCa---------GUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 70128 0.76 0.218275
Target:  5'- aGCGGCUcCGUCAacgaccauGGCGCAGUgcgagccacacUGCACg -3'
miRNA:   3'- aCGCCGAaGCAGU--------CCGCGUCG-----------ACGUG- -5'
21499 3' -59.1 NC_004812.1 + 23498 0.76 0.229153
Target:  5'- gUGCGGCgg-GcCGGGCGCGGCgGCGCc -3'
miRNA:   3'- -ACGCCGaagCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 149006 0.76 0.229153
Target:  5'- gUGCGGCgg-GcCGGGCGCGGCgGCGCc -3'
miRNA:   3'- -ACGCCGaagCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 55455 0.76 0.229153
Target:  5'- cGCGGC--CGUCAGGuCGCAGaaGCGCa -3'
miRNA:   3'- aCGCCGaaGCAGUCC-GCGUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 106773 0.76 0.240486
Target:  5'- aGgGGCggCGUCGGGCGgGGC-GCGCg -3'
miRNA:   3'- aCgCCGaaGCAGUCCGCgUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 14363 0.75 0.258358
Target:  5'- uUGcCGGCcgCG-CGGGCGCGGCgGCGCa -3'
miRNA:   3'- -AC-GCCGaaGCaGUCCGCGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 129725 0.75 0.270866
Target:  5'- cGCGGCggCGUCGGGCcggggGCGGCgGCGg -3'
miRNA:   3'- aCGCCGaaGCAGUCCG-----CGUCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 18435 0.74 0.290534
Target:  5'- cGCGGCgggggccgCGUCcgguGGCGCGGCggggggGCGCg -3'
miRNA:   3'- aCGCCGaa------GCAGu---CCGCGUCGa-----CGUG- -5'
21499 3' -59.1 NC_004812.1 + 4216 0.74 0.297334
Target:  5'- cGCGGCggCGUCGGGCucggggGCGGCgGCGg -3'
miRNA:   3'- aCGCCGaaGCAGUCCG------CGUCGaCGUg -5'
21499 3' -59.1 NC_004812.1 + 98434 0.74 0.304258
Target:  5'- gGCGGCcgCGgggcggCAGGCGCGGggGCGCc -3'
miRNA:   3'- aCGCCGaaGCa-----GUCCGCGUCgaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 127858 0.74 0.311304
Target:  5'- gGCGGCagggCGUCGGGCcCGGC-GCGCg -3'
miRNA:   3'- aCGCCGaa--GCAGUCCGcGUCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 112794 0.74 0.311304
Target:  5'- gGCGGCUccccCGUCGGGCGUgugGGC-GCGCc -3'
miRNA:   3'- aCGCCGAa---GCAGUCCGCG---UCGaCGUG- -5'
21499 3' -59.1 NC_004812.1 + 2350 0.74 0.311304
Target:  5'- gGCGGCagggCGUCGGGCcCGGC-GCGCg -3'
miRNA:   3'- aCGCCGaa--GCAGUCCGcGUCGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.