miRNA display CGI


Results 1 - 20 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 3' -60.6 NC_004812.1 + 96053 0.66 0.735691
Target:  5'- uGCuCCGCcgg-CCCUCCCUCUcgaUCCg -3'
miRNA:   3'- gCGcGGCGcaaaGGGGGGGAGA---AGGa -5'
21501 3' -60.6 NC_004812.1 + 138154 0.66 0.754391
Target:  5'- gGgGCCGCG---CCCCCCCg---CCg -3'
miRNA:   3'- gCgCGGCGCaaaGGGGGGGagaaGGa -5'
21501 3' -60.6 NC_004812.1 + 152408 0.66 0.726211
Target:  5'- aCGcCGCCGCGg-UCCCCgCCg-UUCCc -3'
miRNA:   3'- -GC-GCGGCGCaaAGGGGgGGagAAGGa -5'
21501 3' -60.6 NC_004812.1 + 126556 0.66 0.735691
Target:  5'- cCGCGCgCGCccc-UCCCCCCUCccCCg -3'
miRNA:   3'- -GCGCG-GCGcaaaGGGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 119727 0.66 0.754391
Target:  5'- gGCGCCuaccaccccGCGUacucgCCCCCCCgcgCcUCCc -3'
miRNA:   3'- gCGCGG---------CGCAaa---GGGGGGGa--GaAGGa -5'
21501 3' -60.6 NC_004812.1 + 61253 0.66 0.726211
Target:  5'- cCGCGUCGCcgauGUcUCuCCCUCCUCgucggaUCCUg -3'
miRNA:   3'- -GCGCGGCG----CAaAG-GGGGGGAGa-----AGGA- -5'
21501 3' -60.6 NC_004812.1 + 70009 0.66 0.745087
Target:  5'- cCGCGCCGCGg--CCCgCaaCUUCaUCCg -3'
miRNA:   3'- -GCGCGGCGCaaaGGGgG--GGAGaAGGa -5'
21501 3' -60.6 NC_004812.1 + 121074 0.66 0.745087
Target:  5'- cCGCGCgGgCGUcccgCCCCCCCgcc-CCUa -3'
miRNA:   3'- -GCGCGgC-GCAaa--GGGGGGGagaaGGA- -5'
21501 3' -60.6 NC_004812.1 + 4088 0.66 0.726211
Target:  5'- cCGCGCCGCc--UCCgCCCCCUg-UCg- -3'
miRNA:   3'- -GCGCGGCGcaaAGG-GGGGGAgaAGga -5'
21501 3' -60.6 NC_004812.1 + 51634 0.66 0.754391
Target:  5'- cCGCgGCCGCGUgcgcgCCgagagCCCCUCUcCCc -3'
miRNA:   3'- -GCG-CGGCGCAaa---GGg----GGGGAGAaGGa -5'
21501 3' -60.6 NC_004812.1 + 33963 0.66 0.754391
Target:  5'- gGgGUCGCGg-UCCCCgagcUCCUCUUCUa -3'
miRNA:   3'- gCgCGGCGCaaAGGGG----GGGAGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 137314 0.66 0.697352
Target:  5'- gGC-CCGCG-UUCgCCCCCUCgacaCCg -3'
miRNA:   3'- gCGcGGCGCaAAGgGGGGGAGaa--GGa -5'
21501 3' -60.6 NC_004812.1 + 134306 0.66 0.697352
Target:  5'- gGCGCCGaGg--CCCCCCCg---CCa -3'
miRNA:   3'- gCGCGGCgCaaaGGGGGGGagaaGGa -5'
21501 3' -60.6 NC_004812.1 + 34381 0.66 0.707034
Target:  5'- cCGCGCCGCccacacccucccGUcUCgCgCCCCUUCUUUCg -3'
miRNA:   3'- -GCGCGGCG------------CAaAG-G-GGGGGAGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 84786 0.66 0.707034
Target:  5'- gGcCGCCGCa---CCCUCCCcCUUCCg -3'
miRNA:   3'- gC-GCGGCGcaaaGGGGGGGaGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 121516 0.66 0.726211
Target:  5'- gGCGCCGCGggggCgCCCUCggcgUCCa -3'
miRNA:   3'- gCGCGGCGCaaa-GgGGGGGaga-AGGa -5'
21501 3' -60.6 NC_004812.1 + 56765 0.66 0.697352
Target:  5'- --gGCCGCGacgUCCCCCuCCUCccCCc -3'
miRNA:   3'- gcgCGGCGCaa-AGGGGG-GGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 152910 0.66 0.716656
Target:  5'- gGCGCCGCcgccgCCgaCCUgCUCUUCCa -3'
miRNA:   3'- gCGCGGCGcaaa-GG--GGGgGAGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 63076 0.66 0.726211
Target:  5'- aCGcCGCCGCacccgcgCCCCgCCUCggCCUu -3'
miRNA:   3'- -GC-GCGGCGcaaa---GGGGgGGAGaaGGA- -5'
21501 3' -60.6 NC_004812.1 + 50389 0.66 0.707034
Target:  5'- uCGaCGCCGCcg-UCgCCCCCUUCcgCCa -3'
miRNA:   3'- -GC-GCGGCGcaaAG-GGGGGGAGaaGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.