miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 3' -60.6 NC_004812.1 + 478 0.66 0.754391
Target:  5'- cCGCGuCCGCGcggCCCgucaCCCCUUcUCCc -3'
miRNA:   3'- -GCGC-GGCGCaaaGGG----GGGGAGaAGGa -5'
21501 3' -60.6 NC_004812.1 + 557 0.69 0.531082
Target:  5'- aCGCGCCGCGcgacgCCCgCCCg--UCCc -3'
miRNA:   3'- -GCGCGGCGCaaa--GGGgGGGagaAGGa -5'
21501 3' -60.6 NC_004812.1 + 772 0.72 0.386748
Target:  5'- gGCGCCGCGgg-CCCCUUCUgggccucggguucgCUUCCg -3'
miRNA:   3'- gCGCGGCGCaaaGGGGGGGA--------------GAAGGa -5'
21501 3' -60.6 NC_004812.1 + 1047 0.66 0.735691
Target:  5'- cCGCGCgCGCccc-UCCCCCCUCccCCg -3'
miRNA:   3'- -GCGCG-GCGcaaaGGGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 1223 0.7 0.493503
Target:  5'- gGCGCCGCGggggcUCCUCCCCg---CCc -3'
miRNA:   3'- gCGCGGCGCaa---AGGGGGGGagaaGGa -5'
21501 3' -60.6 NC_004812.1 + 1253 0.68 0.599023
Target:  5'- gGCGCCGCGg--CCgCCCgUUggUCCg -3'
miRNA:   3'- gCGCGGCGCaaaGGgGGGgAGa-AGGa -5'
21501 3' -60.6 NC_004812.1 + 1354 0.73 0.357736
Target:  5'- gGCGuCCGCcgcgCCCCCCCUCggCCc -3'
miRNA:   3'- gCGC-GGCGcaaaGGGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 1397 0.76 0.228059
Target:  5'- cCGCGCCGCG---CCCCCUCUCgccgCCa -3'
miRNA:   3'- -GCGCGGCGCaaaGGGGGGGAGaa--GGa -5'
21501 3' -60.6 NC_004812.1 + 1537 0.71 0.413899
Target:  5'- cCGcCGCCGCc---CCCCCCCcCUUCCc -3'
miRNA:   3'- -GC-GCGGCGcaaaGGGGGGGaGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 1819 0.67 0.677845
Target:  5'- gCGCGCCuCGccucuccUCCCCCCUCcUCCc -3'
miRNA:   3'- -GCGCGGcGCaaa----GGGGGGGAGaAGGa -5'
21501 3' -60.6 NC_004812.1 + 3434 0.69 0.569649
Target:  5'- gGCGCCGCcgcgCCCCCCgUggUCCc -3'
miRNA:   3'- gCGCGGCGcaaaGGGGGGgAgaAGGa -5'
21501 3' -60.6 NC_004812.1 + 4088 0.66 0.726211
Target:  5'- cCGCGCCGCc--UCCgCCCCCUg-UCg- -3'
miRNA:   3'- -GCGCGGCGcaaAGG-GGGGGAgaAGga -5'
21501 3' -60.6 NC_004812.1 + 4441 0.68 0.618729
Target:  5'- cCGgGCCGCGUgUCCCCgCCCgaguaccCCg -3'
miRNA:   3'- -GCgCGGCGCAaAGGGG-GGGagaa---GGa -5'
21501 3' -60.6 NC_004812.1 + 5633 0.67 0.658198
Target:  5'- gGgGCCGCGgcauggucucUUCCUCCCCgcgUCCg -3'
miRNA:   3'- gCgCGGCGCa---------AAGGGGGGGagaAGGa -5'
21501 3' -60.6 NC_004812.1 + 5718 0.67 0.677845
Target:  5'- gCGCGCCGacc-UCCCCCUguguCUCUcUCCg -3'
miRNA:   3'- -GCGCGGCgcaaAGGGGGG----GAGA-AGGa -5'
21501 3' -60.6 NC_004812.1 + 6954 0.67 0.68762
Target:  5'- -cCGCCcCGUUUCgcgCCCCCC-CUUCCc -3'
miRNA:   3'- gcGCGGcGCAAAG---GGGGGGaGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 8083 0.71 0.420656
Target:  5'- cCGCGCCcgGCGgcccgcgccgCCCCCCCUCccCCg -3'
miRNA:   3'- -GCGCGG--CGCaaa-------GGGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 10564 0.76 0.235672
Target:  5'- aGCGCCGCGacccUggcgucccaacacgCCCCCgCCUCUUCCUc -3'
miRNA:   3'- gCGCGGCGCa---Aa-------------GGGGG-GGAGAAGGA- -5'
21501 3' -60.6 NC_004812.1 + 11664 0.69 0.559932
Target:  5'- gGCGCCuCGgccUCuCCCCCCggggggCUUCCg -3'
miRNA:   3'- gCGCGGcGCaa-AG-GGGGGGa-----GAAGGa -5'
21501 3' -60.6 NC_004812.1 + 14822 0.67 0.638473
Target:  5'- cCGCGCgGCccg-CCCCCCCgcgCggCCg -3'
miRNA:   3'- -GCGCGgCGcaaaGGGGGGGa--GaaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.