miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 3' -60.6 NC_004812.1 + 11664 0.69 0.559932
Target:  5'- gGCGCCuCGgccUCuCCCCCCggggggCUUCCg -3'
miRNA:   3'- gCGCGGcGCaa-AG-GGGGGGa-----GAAGGa -5'
21501 3' -60.6 NC_004812.1 + 31418 0.71 0.457188
Target:  5'- gGCGCCGCGccaCCUCCCCga-UCCa -3'
miRNA:   3'- gCGCGGCGCaaaGGGGGGGagaAGGa -5'
21501 3' -60.6 NC_004812.1 + 118183 0.71 0.457188
Target:  5'- cCGCGCauCGCcg--CCCCCCCUCccUCCUu -3'
miRNA:   3'- -GCGCG--GCGcaaaGGGGGGGAGa-AGGA- -5'
21501 3' -60.6 NC_004812.1 + 153084 0.7 0.493503
Target:  5'- gGCGCCGCGg--CCCCgCCCcCggggCCg -3'
miRNA:   3'- gCGCGGCGCaaaGGGG-GGGaGaa--GGa -5'
21501 3' -60.6 NC_004812.1 + 1223 0.7 0.493503
Target:  5'- gGCGCCGCGggggcUCCUCCCCg---CCc -3'
miRNA:   3'- gCGCGGCGCaa---AGGGGGGGagaaGGa -5'
21501 3' -60.6 NC_004812.1 + 50200 0.69 0.521582
Target:  5'- aGCGCCGCGg--CCCCCCgCUg-UCg- -3'
miRNA:   3'- gCGCGGCGCaaaGGGGGG-GAgaAGga -5'
21501 3' -60.6 NC_004812.1 + 80372 0.69 0.521582
Target:  5'- cCGUGUgGUGUUUCCgccgcccgCCCCCcCUUCCg -3'
miRNA:   3'- -GCGCGgCGCAAAGG--------GGGGGaGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 126065 0.69 0.531082
Target:  5'- aCGCGCCGCGcgacgCCCgCCCg--UCCc -3'
miRNA:   3'- -GCGCGGCGCaaa--GGGgGGGagaAGGa -5'
21501 3' -60.6 NC_004812.1 + 55732 0.69 0.540643
Target:  5'- gGgGCCGCGgcgcccUCCCCCgCCUCccCCg -3'
miRNA:   3'- gCgCGGCGCaa----AGGGGG-GGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 119213 0.71 0.430915
Target:  5'- gGUGuCCGCGg--CCCCCCCUUg-CCUg -3'
miRNA:   3'- gCGC-GGCGCaaaGGGGGGGAGaaGGA- -5'
21501 3' -60.6 NC_004812.1 + 99676 0.71 0.422356
Target:  5'- gGCGCCGCuagacgCCCCCgCCUCcgCCa -3'
miRNA:   3'- gCGCGGCGcaaa--GGGGG-GGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 8083 0.71 0.420656
Target:  5'- cCGCGCCcgGCGgcccgcgccgCCCCCCCUCccCCg -3'
miRNA:   3'- -GCGCGG--CGCaaa-------GGGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 1397 0.76 0.228059
Target:  5'- cCGCGCCGCG---CCCCCUCUCgccgCCa -3'
miRNA:   3'- -GCGCGGCGCaaaGGGGGGGAGaa--GGa -5'
21501 3' -60.6 NC_004812.1 + 10564 0.76 0.235672
Target:  5'- aGCGCCGCGacccUggcgucccaacacgCCCCCgCCUCUUCCUc -3'
miRNA:   3'- gCGCGGCGCa---Aa-------------GGGGG-GGAGAAGGA- -5'
21501 3' -60.6 NC_004812.1 + 133845 0.73 0.320309
Target:  5'- aGCGCCGaUGUguucccaUUCCCUCCCUCUcggauUCCg -3'
miRNA:   3'- gCGCGGC-GCA-------AAGGGGGGGAGA-----AGGa -5'
21501 3' -60.6 NC_004812.1 + 108927 0.73 0.335356
Target:  5'- cCGCgGCCGCGggUUUCCCCCUCUa--- -3'
miRNA:   3'- -GCG-CGGCGCaaAGGGGGGGAGAagga -5'
21501 3' -60.6 NC_004812.1 + 126862 0.73 0.357736
Target:  5'- gGCGuCCGCcgcgCCCCCCCUCggCCc -3'
miRNA:   3'- gCGC-GGCGcaaaGGGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 145023 0.72 0.373227
Target:  5'- uCGCGCgGCGUcccUCCCCCCCggugCCc -3'
miRNA:   3'- -GCGCGgCGCAa--AGGGGGGGagaaGGa -5'
21501 3' -60.6 NC_004812.1 + 126280 0.72 0.386748
Target:  5'- gGCGCCGCGgg-CCCCUUCUgggccucggguucgCUUCCg -3'
miRNA:   3'- gCGCGGCGCaaaGGGGGGGA--------------GAAGGa -5'
21501 3' -60.6 NC_004812.1 + 127045 0.71 0.413899
Target:  5'- cCGcCGCCGCc---CCCCCCCcCUUCCc -3'
miRNA:   3'- -GC-GCGGCGcaaaGGGGGGGaGAAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.