miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 3' -60.6 NC_004812.1 + 62597 1.07 0.001536
Target:  5'- uCGCGCCGCGUUUCCCCCCCUCUUCCUg -3'
miRNA:   3'- -GCGCGGCGCAAAGGGGGGGAGAAGGA- -5'
21501 3' -60.6 NC_004812.1 + 92485 0.78 0.171032
Target:  5'- uCGCGuCCGCGUccUCCCCCCCgUCUgCCg -3'
miRNA:   3'- -GCGC-GGCGCAa-AGGGGGGG-AGAaGGa -5'
21501 3' -60.6 NC_004812.1 + 156344 0.76 0.217545
Target:  5'- aGCGCgCGCGggagacCCCCCCCUCcUCCc -3'
miRNA:   3'- gCGCG-GCGCaaa---GGGGGGGAGaAGGa -5'
21501 3' -60.6 NC_004812.1 + 125443 0.76 0.217545
Target:  5'- aGCGCgCGCGggagacCCCCCCCUCcUCCc -3'
miRNA:   3'- gCGCG-GCGCaaa---GGGGGGGAGaAGGa -5'
21501 3' -60.6 NC_004812.1 + 1397 0.76 0.228059
Target:  5'- cCGCGCCGCG---CCCCCUCUCgccgCCa -3'
miRNA:   3'- -GCGCGGCGCaaaGGGGGGGAGaa--GGa -5'
21501 3' -60.6 NC_004812.1 + 32298 0.76 0.228059
Target:  5'- cCGCGCCGCG---CCCCCUCUCgccgCCa -3'
miRNA:   3'- -GCGCGGCGCaaaGGGGGGGAGaa--GGa -5'
21501 3' -60.6 NC_004812.1 + 10564 0.76 0.235672
Target:  5'- aGCGCCGCGacccUggcgucccaacacgCCCCCgCCUCUUCCUc -3'
miRNA:   3'- gCGCGGCGCa---Aa-------------GGGGG-GGAGAAGGA- -5'
21501 3' -60.6 NC_004812.1 + 141278 0.75 0.244633
Target:  5'- gGCGCUGCGUcacUUCCCCCUCgcgCggCCUg -3'
miRNA:   3'- gCGCGGCGCA---AAGGGGGGGa--GaaGGA- -5'
21501 3' -60.6 NC_004812.1 + 51181 0.74 0.29372
Target:  5'- cCGCGCaccgaGCGUUccUUCCCCCCUCgcgCCc -3'
miRNA:   3'- -GCGCGg----CGCAA--AGGGGGGGAGaa-GGa -5'
21501 3' -60.6 NC_004812.1 + 128879 0.74 0.307135
Target:  5'- cCGCuGaCCGCGgccccccgCCCCCCCUCguccgUCCUg -3'
miRNA:   3'- -GCG-C-GGCGCaaa-----GGGGGGGAGa----AGGA- -5'
21501 3' -60.6 NC_004812.1 + 18580 0.74 0.314016
Target:  5'- cCGC-CCGCGUUcgCCCCCCCUUUUgUa -3'
miRNA:   3'- -GCGcGGCGCAAa-GGGGGGGAGAAgGa -5'
21501 3' -60.6 NC_004812.1 + 133845 0.73 0.320309
Target:  5'- aGCGCCGaUGUguucccaUUCCCUCCCUCUcggauUCCg -3'
miRNA:   3'- gCGCGGC-GCA-------AAGGGGGGGAGA-----AGGa -5'
21501 3' -60.6 NC_004812.1 + 56483 0.73 0.321014
Target:  5'- cCGCGCCGCcacgCCUCCCCUCcccUCCc -3'
miRNA:   3'- -GCGCGGCGcaaaGGGGGGGAGa--AGGa -5'
21501 3' -60.6 NC_004812.1 + 108927 0.73 0.335356
Target:  5'- cCGCgGCCGCGggUUUCCCCCUCUa--- -3'
miRNA:   3'- -GCG-CGGCGCaaAGGGGGGGAGAagga -5'
21501 3' -60.6 NC_004812.1 + 16473 0.73 0.342701
Target:  5'- gCGgGUCGUGUUUCCgCCCCCgugUCCg -3'
miRNA:   3'- -GCgCGGCGCAAAGG-GGGGGagaAGGa -5'
21501 3' -60.6 NC_004812.1 + 126862 0.73 0.357736
Target:  5'- gGCGuCCGCcgcgCCCCCCCUCggCCc -3'
miRNA:   3'- gCGC-GGCGcaaaGGGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 1354 0.73 0.357736
Target:  5'- gGCGuCCGCcgcgCCCCCCCUCggCCc -3'
miRNA:   3'- gCGC-GGCGcaaaGGGGGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 41257 0.72 0.373227
Target:  5'- gGCGCCGCG--UCCCCgCCCgcgCUcCCg -3'
miRNA:   3'- gCGCGGCGCaaAGGGG-GGGa--GAaGGa -5'
21501 3' -60.6 NC_004812.1 + 40461 0.72 0.373227
Target:  5'- cCGCGCCGCGgcccuguggCCCgCCCUCggggCCc -3'
miRNA:   3'- -GCGCGGCGCaaa------GGGgGGGAGaa--GGa -5'
21501 3' -60.6 NC_004812.1 + 145023 0.72 0.373227
Target:  5'- uCGCGCgGCGUcccUCCCCCCCggugCCc -3'
miRNA:   3'- -GCGCGgCGCAa--AGGGGGGGagaaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.