miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 5' -52.1 NC_004812.1 + 83477 0.66 0.9743
Target:  5'- -aGGCCCGCuCGGggUcgucggGGAGCGCgACGg -3'
miRNA:   3'- uaUCGGGCGcGCCuuG------UUUUGUG-UGU- -5'
21501 5' -52.1 NC_004812.1 + 31240 0.66 0.976918
Target:  5'- --uGCCCGUcgGCGucGGCAAAGCGCGCc -3'
miRNA:   3'- uauCGGGCG--CGCc-UUGUUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 73147 0.66 0.976918
Target:  5'- --cGCgCCGcCGCGGAcCAGcACGCGCu -3'
miRNA:   3'- uauCG-GGC-GCGCCUuGUUuUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 156545 0.66 0.976918
Target:  5'- -gAGCCCGCcCGGGAgccCGcccAAACGCGCc -3'
miRNA:   3'- uaUCGGGCGcGCCUU---GU---UUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 128725 0.66 0.971473
Target:  5'- -gGGCCCgaggcGCGCGGcGGCcGAAgGCGCGg -3'
miRNA:   3'- uaUCGGG-----CGCGCC-UUGuUUUgUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 74052 0.66 0.976918
Target:  5'- -gAGCCCcucGgGCGGcAGCGgcGGGCGCGCGc -3'
miRNA:   3'- uaUCGGG---CgCGCC-UUGU--UUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 67277 0.66 0.972629
Target:  5'- -gAGCuCCGCGuCGGGccgggccccggcgccGCAGAACuGCGCGa -3'
miRNA:   3'- uaUCG-GGCGC-GCCU---------------UGUUUUG-UGUGU- -5'
21501 5' -52.1 NC_004812.1 + 110982 0.66 0.971473
Target:  5'- -aAGCaCGgGCGGAACAGc-CGCGCGa -3'
miRNA:   3'- uaUCGgGCgCGCCUUGUUuuGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 737 0.66 0.971473
Target:  5'- --cGCCgGCGgGGGugGGGGCgGCGCGa -3'
miRNA:   3'- uauCGGgCGCgCCUugUUUUG-UGUGU- -5'
21501 5' -52.1 NC_004812.1 + 154144 0.66 0.9743
Target:  5'- --cGCCgGCGCcccGGAcuuccgccgcgGCGAGGCGCACu -3'
miRNA:   3'- uauCGGgCGCG---CCU-----------UGUUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 56892 0.66 0.971473
Target:  5'- -gGGCCUGUGCGGccAGCccuGGGCGCAg- -3'
miRNA:   3'- uaUCGGGCGCGCC--UUGu--UUUGUGUgu -5'
21501 5' -52.1 NC_004812.1 + 97375 0.66 0.971473
Target:  5'- -cAGCUCGcCGCGGucGCGggcguGGGCGCGCGg -3'
miRNA:   3'- uaUCGGGC-GCGCCu-UGU-----UUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 135 0.66 0.976918
Target:  5'- -gAGCCCGCcCGGGAgccCGcccAAACGCGCc -3'
miRNA:   3'- uaUCGGGCGcGCCUU---GU---UUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 148234 0.66 0.976665
Target:  5'- gGUGGCCgGCGgGGGGagcagggggcguuCGGGAUGCGCGa -3'
miRNA:   3'- -UAUCGGgCGCgCCUU-------------GUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 9681 0.66 0.976918
Target:  5'- -gAGCCCGCGaGGAAaccCAGAGgaaACGCGa -3'
miRNA:   3'- uaUCGGGCGCgCCUU---GUUUUg--UGUGU- -5'
21501 5' -52.1 NC_004812.1 + 64169 0.66 0.971473
Target:  5'- -gGGCuCCGCGCGGGAgGGcggcgggggccGGCACGu- -3'
miRNA:   3'- uaUCG-GGCGCGCCUUgUU-----------UUGUGUgu -5'
21501 5' -52.1 NC_004812.1 + 101085 0.66 0.976918
Target:  5'- --cGCgCCGCGUGGcGCAcgGcCACGCGg -3'
miRNA:   3'- uauCG-GGCGCGCCuUGUuuU-GUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 109442 0.66 0.976918
Target:  5'- -aGGCCCGCcgaGGGAgAGGGCgGCGCGg -3'
miRNA:   3'- uaUCGGGCGcg-CCUUgUUUUG-UGUGU- -5'
21501 5' -52.1 NC_004812.1 + 104581 0.66 0.976918
Target:  5'- -cAGCUcguuggCGCGCGGAACGAggUugAg- -3'
miRNA:   3'- uaUCGG------GCGCGCCUUGUUuuGugUgu -5'
21501 5' -52.1 NC_004812.1 + 117724 0.66 0.983597
Target:  5'- -aAGgCCGUGCGGAgccucgacgACGucGCGCGCc -3'
miRNA:   3'- uaUCgGGCGCGCCU---------UGUuuUGUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.