miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 5' -52.1 NC_004812.1 + 62634 1.06 0.008644
Target:  5'- uAUAGCCCGCGCGGAACAAAACACACAc -3'
miRNA:   3'- -UAUCGGGCGCGCCUUGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 30631 0.79 0.409844
Target:  5'- -cGGgCCGCGCGGAcgcggggcGCGGGACGCGCGg -3'
miRNA:   3'- uaUCgGGCGCGCCU--------UGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 156139 0.79 0.409844
Target:  5'- -cGGgCCGCGCGGAcgcggggcGCGGGACGCGCGg -3'
miRNA:   3'- uaUCgGGCGCGCCU--------UGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 30341 0.78 0.485547
Target:  5'- -gGGCCCGCGgcgcCGGGagGCGAGGCGCGCGc -3'
miRNA:   3'- uaUCGGGCGC----GCCU--UGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 155849 0.78 0.485547
Target:  5'- -gGGCCCGCGgcgcCGGGagGCGAGGCGCGCGc -3'
miRNA:   3'- uaUCGGGCGC----GCCU--UGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 154977 0.77 0.50551
Target:  5'- -cGGgCCGCGCGGGACcc-GCGCGCAc -3'
miRNA:   3'- uaUCgGGCGCGCCUUGuuuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 29469 0.77 0.50551
Target:  5'- -cGGgCCGCGCGGGACcc-GCGCGCAc -3'
miRNA:   3'- uaUCgGGCGCGCCUUGuuuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 18943 0.77 0.50551
Target:  5'- -aGGCCCGggaaGCGGAagcgGCGAGACACACc -3'
miRNA:   3'- uaUCGGGCg---CGCCU----UGUUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 95406 0.77 0.50551
Target:  5'- -aAGCCCGCGCGcccGGCGAGugACGCGc -3'
miRNA:   3'- uaUCGGGCGCGCc--UUGUUUugUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 115061 0.77 0.515623
Target:  5'- -cAGCCCGCGCcggcGGAGCucgcuGCGCACGu -3'
miRNA:   3'- uaUCGGGCGCG----CCUUGuuu--UGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 94691 0.77 0.536086
Target:  5'- -gAGCCCGCGCGGcGGCGcgugcggcccGAGCACAUc -3'
miRNA:   3'- uaUCGGGCGCGCC-UUGU----------UUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 105443 0.76 0.567283
Target:  5'- --cGCCCGagucgggaacgaCGCGGGGCGGGGCGCGCGc -3'
miRNA:   3'- uauCGGGC------------GCGCCUUGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 128446 0.76 0.588337
Target:  5'- -aGGuCCCGCGUGGAGagcaGGAGCACGCc -3'
miRNA:   3'- uaUC-GGGCGCGCCUUg---UUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 2938 0.76 0.588337
Target:  5'- -aGGuCCCGCGUGGAGagcaGGAGCACGCc -3'
miRNA:   3'- uaUC-GGGCGCGCCUUg---UUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 101987 0.76 0.598919
Target:  5'- --cGCCCGCGCGGGGgGu--CGCGCGa -3'
miRNA:   3'- uauCGGGCGCGCCUUgUuuuGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 11213 0.75 0.609529
Target:  5'- --cGCCCGCGCGcGccGGCAGGugACGCAg -3'
miRNA:   3'- uauCGGGCGCGC-C--UUGUUUugUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 29925 0.75 0.652062
Target:  5'- -cGGCCCGCggGUGGAGCGAGcaGCACGa -3'
miRNA:   3'- uaUCGGGCG--CGCCUUGUUUugUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 86978 0.74 0.662675
Target:  5'- --cGCCCGCGggugcCGGAGCGgcggGGGCACGCAc -3'
miRNA:   3'- uauCGGGCGC-----GCCUUGU----UUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 149132 0.74 0.673261
Target:  5'- --cGUCCGCGCGGccgcCGGGGCGCGCGg -3'
miRNA:   3'- uauCGGGCGCGCCuu--GUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 81857 0.74 0.673261
Target:  5'- -gGGgCCGCGCGcGAGCAGcuGCGCGCGc -3'
miRNA:   3'- uaUCgGGCGCGC-CUUGUUu-UGUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.