miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 5' -52.1 NC_004812.1 + 20 0.71 0.855981
Target:  5'- -cGGCgCGCGCGcGAAaauAAACGCGCGg -3'
miRNA:   3'- uaUCGgGCGCGC-CUUgu-UUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 105 0.69 0.913035
Target:  5'- -gGGCgCGCGCGGGGCcgGGAGCcCGCc -3'
miRNA:   3'- uaUCGgGCGCGCCUUG--UUUUGuGUGu -5'
21501 5' -52.1 NC_004812.1 + 135 0.66 0.976918
Target:  5'- -gAGCCCGCcCGGGAgccCGcccAAACGCGCc -3'
miRNA:   3'- uaUCGGGCGcGCCUU---GU---UUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 253 0.7 0.892775
Target:  5'- ---uCCCGCGCGGGAgGAGgggggggucucccGCGCGCGc -3'
miRNA:   3'- uaucGGGCGCGCCUUgUUU-------------UGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 669 0.69 0.919049
Target:  5'- --cGCCCGgGCGGcGCGAGGggaGCGCGu -3'
miRNA:   3'- uauCGGGCgCGCCuUGUUUUg--UGUGU- -5'
21501 5' -52.1 NC_004812.1 + 737 0.66 0.971473
Target:  5'- --cGCCgGCGgGGGugGGGGCgGCGCGa -3'
miRNA:   3'- uauCGGgCGCgCCUugUUUUG-UGUGU- -5'
21501 5' -52.1 NC_004812.1 + 1615 0.67 0.957926
Target:  5'- --cGcCCCGCGCgaGGGACcguGCGCGCGg -3'
miRNA:   3'- uauC-GGGCGCG--CCUUGuuuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 2144 0.67 0.953949
Target:  5'- -aGGCCC-CGCGG-GCGGGGCuCGCGg -3'
miRNA:   3'- uaUCGGGcGCGCCuUGUUUUGuGUGU- -5'
21501 5' -52.1 NC_004812.1 + 2305 0.67 0.968428
Target:  5'- -gGGUCCG-GCucGAGCAGGGCGCGCGc -3'
miRNA:   3'- uaUCGGGCgCGc-CUUGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 2632 0.67 0.956759
Target:  5'- -cGGCCCagGCGCGGcGGCGgcgcguccggguagAGGCGCGCGc -3'
miRNA:   3'- uaUCGGG--CGCGCC-UUGU--------------UUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 2727 0.7 0.863941
Target:  5'- -cAGCaCgGCGCGGcGCAGGucGCGCGCGg -3'
miRNA:   3'- uaUCG-GgCGCGCCuUGUUU--UGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 2938 0.76 0.588337
Target:  5'- -aGGuCCCGCGUGGAGagcaGGAGCACGCc -3'
miRNA:   3'- uaUC-GGGCGCGCCUUg---UUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 3046 0.67 0.960566
Target:  5'- --uGCCCaGCGCGGcgAGCAGGaaggagaggccgccGCGCGCGu -3'
miRNA:   3'- uauCGGG-CGCGCC--UUGUUU--------------UGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 3216 0.66 0.983597
Target:  5'- -gGGCCCgaggcGCGCGGcgGGCcGAAgGCGCGg -3'
miRNA:   3'- uaUCGGG-----CGCGCC--UUGuUUUgUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 3257 0.71 0.855981
Target:  5'- -gGGCUCGgGCGGGcCGcAGCGCGCGg -3'
miRNA:   3'- uaUCGGGCgCGCCUuGUuUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 3293 0.68 0.935544
Target:  5'- -cAGCgCGCGCGGGucgaaggcgaGCGcgGCGCGCc -3'
miRNA:   3'- uaUCGgGCGCGCCU----------UGUuuUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 3652 0.66 0.979101
Target:  5'- --cGCCCGCGUcugcgucGGccAGCAGGGgGCGCAg -3'
miRNA:   3'- uauCGGGCGCG-------CC--UUGUUUUgUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 3871 0.68 0.945253
Target:  5'- --cGCgCGUGCGGcGCAGcuCGCGCAg -3'
miRNA:   3'- uauCGgGCGCGCCuUGUUuuGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 3926 0.73 0.74579
Target:  5'- -gGGgCCGCGCGGcggcGGCAcgGCGCGCGc -3'
miRNA:   3'- uaUCgGGCGCGCC----UUGUuuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 4260 0.67 0.968428
Target:  5'- --cGCCCGcCGCGGcGGCGuucuCGCGCGc -3'
miRNA:   3'- uauCGGGC-GCGCC-UUGUuuu-GUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.