miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 5' -52.1 NC_004812.1 + 118658 0.72 0.775466
Target:  5'- -cGGCCCugGCGCGGuccACAGucgcGGCGCGCAg -3'
miRNA:   3'- uaUCGGG--CGCGCCu--UGUU----UUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 125282 0.74 0.694316
Target:  5'- -gGGCgCGCGCGaGAGCGccGCGCGCGg -3'
miRNA:   3'- uaUCGgGCGCGC-CUUGUuuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 94112 0.73 0.715146
Target:  5'- cUGGCCCugGUGCGGGGCcucGCGCACGu -3'
miRNA:   3'- uAUCGGG--CGCGCCUUGuuuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 124324 0.73 0.715146
Target:  5'- -gGGCgCgGCGCGGGGCGGGccgucGCGCACGg -3'
miRNA:   3'- uaUCG-GgCGCGCCUUGUUU-----UGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 139319 0.73 0.715146
Target:  5'- -cGGCCgGCGCGGAgaGCGAcGCGgGCGa -3'
miRNA:   3'- uaUCGGgCGCGCCU--UGUUuUGUgUGU- -5'
21501 5' -52.1 NC_004812.1 + 30102 0.73 0.735669
Target:  5'- -gAGUCgGCGUGGGgcuGCGGGGCGCACGu -3'
miRNA:   3'- uaUCGGgCGCGCCU---UGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 76262 0.73 0.744783
Target:  5'- -aGGCCCGCGCGcGccgccucGACGGcGCGCGCGg -3'
miRNA:   3'- uaUCGGGCGCGC-C-------UUGUUuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 129434 0.73 0.74579
Target:  5'- -gGGgCCGCGCGGcggcGGCAcgGCGCGCGc -3'
miRNA:   3'- uaUCgGGCGCGCC----UUGUuuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 54742 0.73 0.755804
Target:  5'- -gGGCCgGCGCGGGGCcGcauccccgcGGCGCGCGg -3'
miRNA:   3'- uaUCGGgCGCGCCUUGuU---------UUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 103594 0.74 0.694316
Target:  5'- gGUAGCgguacaGCGCGGAGCAGAaguuggccaGCACGCGg -3'
miRNA:   3'- -UAUCGgg----CGCGCCUUGUUU---------UGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 34420 0.74 0.683812
Target:  5'- cGUGGCCCGuCGcCGGGGCGu--CGCGCGg -3'
miRNA:   3'- -UAUCGGGC-GC-GCCUUGUuuuGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 83140 0.74 0.683812
Target:  5'- cUGGCCCGCGCcaGGAACcuGAGGCccuccuGCACAa -3'
miRNA:   3'- uAUCGGGCGCG--CCUUG--UUUUG------UGUGU- -5'
21501 5' -52.1 NC_004812.1 + 155849 0.78 0.485547
Target:  5'- -gGGCCCGCGgcgcCGGGagGCGAGGCGCGCGc -3'
miRNA:   3'- uaUCGGGCGC----GCCU--UGUUUUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 18943 0.77 0.50551
Target:  5'- -aGGCCCGggaaGCGGAagcgGCGAGACACACc -3'
miRNA:   3'- uaUCGGGCg---CGCCU----UGUUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 154977 0.77 0.50551
Target:  5'- -cGGgCCGCGCGGGACcc-GCGCGCAc -3'
miRNA:   3'- uaUCgGGCGCGCCUUGuuuUGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 94691 0.77 0.536086
Target:  5'- -gAGCCCGCGCGGcGGCGcgugcggcccGAGCACAUc -3'
miRNA:   3'- uaUCGGGCGCGCC-UUGU----------UUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 128446 0.76 0.588337
Target:  5'- -aGGuCCCGCGUGGAGagcaGGAGCACGCc -3'
miRNA:   3'- uaUC-GGGCGCGCCUUg---UUUUGUGUGu -5'
21501 5' -52.1 NC_004812.1 + 101987 0.76 0.598919
Target:  5'- --cGCCCGCGCGGGGgGu--CGCGCGa -3'
miRNA:   3'- uauCGGGCGCGCCUUgUuuuGUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 29925 0.75 0.652062
Target:  5'- -cGGCCCGCggGUGGAGCGAGcaGCACGa -3'
miRNA:   3'- uaUCGGGCG--CGCCUUGUUUugUGUGU- -5'
21501 5' -52.1 NC_004812.1 + 149132 0.74 0.673261
Target:  5'- --cGUCCGCGCGGccgcCGGGGCGCGCGg -3'
miRNA:   3'- uauCGGGCGCGCCuu--GUUUUGUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.