miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 3' -62.4 NC_004812.1 + 138778 0.66 0.630598
Target:  5'- uCGAucccGGCCGCcugGGUCgUGGCCGCGAAc -3'
miRNA:   3'- uGCUc---CUGGCG---CCAGgGCUGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 139742 0.66 0.630598
Target:  5'- cGCGAcGGGCCacgcCGGUCCCGGggcCCGCc-- -3'
miRNA:   3'- -UGCU-CCUGGc---GCCAGGGCU---GGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 119473 0.66 0.630598
Target:  5'- cGCGAGacGGCCGCGGggCCgCGGCgGCa-- -3'
miRNA:   3'- -UGCUC--CUGGCGCCa-GG-GCUGgCGcuu -5'
21502 3' -62.4 NC_004812.1 + 156024 0.66 0.620839
Target:  5'- gACGcccGGGGCCGgGGg-CCGcGCCGCGGGa -3'
miRNA:   3'- -UGC---UCCUGGCgCCagGGC-UGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 1439 0.66 0.620839
Target:  5'- uGCGGGGcCC-CGGUCCCcgcccccacGACCGCc-- -3'
miRNA:   3'- -UGCUCCuGGcGCCAGGG---------CUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 61296 0.66 0.611089
Target:  5'- gGCGugcGGGCCGCGcuUCCCu-CCGCGGGa -3'
miRNA:   3'- -UGCu--CCUGGCGCc-AGGGcuGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 6193 0.66 0.620839
Target:  5'- -gGAGGcCCGgGGcgCCCGGcggcCCGCGGAc -3'
miRNA:   3'- ugCUCCuGGCgCCa-GGGCU----GGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 64181 0.66 0.630598
Target:  5'- -gGAGGGCgGCGGgggCCGGCaCGUGGGa -3'
miRNA:   3'- ugCUCCUGgCGCCag-GGCUG-GCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 4196 0.66 0.611089
Target:  5'- cCGAGGGcgcccCCGCGGcgCCCGGCCccacGCGc- -3'
miRNA:   3'- uGCUCCU-----GGCGCCa-GGGCUGG----CGCuu -5'
21502 3' -62.4 NC_004812.1 + 87320 0.66 0.611089
Target:  5'- uUGAGGGCCuggagcGCGG-CCCGACgaUGCGGc -3'
miRNA:   3'- uGCUCCUGG------CGCCaGGGCUG--GCGCUu -5'
21502 3' -62.4 NC_004812.1 + 33961 0.66 0.634502
Target:  5'- cCGGGG-UCGCGGUcCCCGAgcuccucuucuaccaCUGCGAGc -3'
miRNA:   3'- uGCUCCuGGCGCCA-GGGCU---------------GGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 94298 0.66 0.630598
Target:  5'- uGCGccuGGGugCGCuuGGUCgCCGGCUGCGc- -3'
miRNA:   3'- -UGC---UCCugGCG--CCAG-GGCUGGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 4391 0.66 0.630598
Target:  5'- cCGAGGcgucGCCcggGUGGUCCCG-CCGCa-- -3'
miRNA:   3'- uGCUCC----UGG---CGCCAGGGCuGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 143081 0.66 0.630598
Target:  5'- cCGAcGGGCCGUGcGaCCCGGCCGUc-- -3'
miRNA:   3'- uGCU-CCUGGCGC-CaGGGCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 41906 0.66 0.614013
Target:  5'- -gGAGGGCCucucgacggcauucCGGUCCCGcggccgccccuggACCGCGAc -3'
miRNA:   3'- ugCUCCUGGc-------------GCCAGGGC-------------UGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 142042 0.66 0.620839
Target:  5'- gACGAGGACgaGCaGGcCCCGGgCGaCGAGc -3'
miRNA:   3'- -UGCUCCUGg-CG-CCaGGGCUgGC-GCUU- -5'
21502 3' -62.4 NC_004812.1 + 156108 0.66 0.634502
Target:  5'- aGCGGGGACCGgGGgCCgGgagaaggggugacggGCCGCGc- -3'
miRNA:   3'- -UGCUCCUGGCgCCaGGgC---------------UGGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 125841 0.66 0.66957
Target:  5'- gGCGGGGccggcucgcCCGCGGcCCCGGgcaUCGUGGAg -3'
miRNA:   3'- -UGCUCCu--------GGCGCCaGGGCU---GGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 151347 0.66 0.609141
Target:  5'- aGCGcGGGGCCGCGGcggccgacUCggcgcgccccgaCGGCCGCGAGg -3'
miRNA:   3'- -UGC-UCCUGGCGCC--------AGg-----------GCUGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 152633 0.66 0.611089
Target:  5'- cCGAGGGCUacgGCGGcgaCCUGGCCGCc-- -3'
miRNA:   3'- uGCUCCUGG---CGCCa--GGGCUGGCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.