miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 3' -62.4 NC_004812.1 + 43 0.68 0.543581
Target:  5'- cGCGGcGGGCCGCGGgCgCGGCgGCGc- -3'
miRNA:   3'- -UGCU-CCUGGCGCCaGgGCUGgCGCuu -5'
21502 3' -62.4 NC_004812.1 + 845 0.72 0.29804
Target:  5'- -gGAGGGCCccgcGCGuGUCCCcgcGGCCGCGAGc -3'
miRNA:   3'- ugCUCCUGG----CGC-CAGGG---CUGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 934 0.69 0.48774
Target:  5'- cCGAGcccGCCGCGcGcUCCCGGCUGUGGAg -3'
miRNA:   3'- uGCUCc--UGGCGC-C-AGGGCUGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 1013 0.66 0.640357
Target:  5'- gGCcGGGGCCGCgcccccgcgaGGgCCCGGCCGCc-- -3'
miRNA:   3'- -UGcUCCUGGCG----------CCaGGGCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 1066 0.7 0.401333
Target:  5'- ----cGGCCGCGGUcuccuccugCCCGGCCGCGGu -3'
miRNA:   3'- ugcucCUGGCGCCA---------GGGCUGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 1421 0.68 0.515355
Target:  5'- gACGGcGGCCGCGGggaggggCCgGgGCCGCGAGg -3'
miRNA:   3'- -UGCUcCUGGCGCCa------GGgC-UGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 1439 0.66 0.620839
Target:  5'- uGCGGGGcCC-CGGUCCCcgcccccacGACCGCc-- -3'
miRNA:   3'- -UGCUCCuGGcGCCAGGG---------CUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 1622 0.67 0.600381
Target:  5'- cGCGAgGGACCGUgcgcgcgGGUCCCG--CGCGGc -3'
miRNA:   3'- -UGCU-CCUGGCG-------CCAGGGCugGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 1673 0.69 0.452051
Target:  5'- cCGcGGcGCCGCGG-CCCGcCCGCGGc -3'
miRNA:   3'- uGCuCC-UGGCGCCaGGGCuGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 2060 0.71 0.369595
Target:  5'- cACGucGGACCGCcGUCCgGACCGCc-- -3'
miRNA:   3'- -UGCu-CCUGGCGcCAGGgCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 3491 0.7 0.426244
Target:  5'- cGCGGcGGGCCGCGGgcgcgggCCCGggGCCgGCGGc -3'
miRNA:   3'- -UGCU-CCUGGCGCCa------GGGC--UGG-CGCUu -5'
21502 3' -62.4 NC_004812.1 + 3534 0.68 0.543581
Target:  5'- gGCG-GGGCCGCGGcgCCgGGCCGg--- -3'
miRNA:   3'- -UGCuCCUGGCGCCa-GGgCUGGCgcuu -5'
21502 3' -62.4 NC_004812.1 + 4196 0.66 0.611089
Target:  5'- cCGAGGGcgcccCCGCGGcgCCCGGCCccacGCGc- -3'
miRNA:   3'- uGCUCCU-----GGCGCCa-GGGCUGG----CGCuu -5'
21502 3' -62.4 NC_004812.1 + 4207 0.68 0.543581
Target:  5'- gGCGGGGACCGCGGcggcgUCgGGCuCGgGGg -3'
miRNA:   3'- -UGCUCCUGGCGCCa----GGgCUG-GCgCUu -5'
21502 3' -62.4 NC_004812.1 + 4246 0.67 0.572295
Target:  5'- gGCGGcGGCgGCGGcgCCCG-CCGCGGc -3'
miRNA:   3'- -UGCUcCUGgCGCCa-GGGCuGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 4391 0.66 0.630598
Target:  5'- cCGAGGcgucGCCcggGUGGUCCCG-CCGCa-- -3'
miRNA:   3'- uGCUCC----UGG---CGCCAGGGCuGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 4434 0.68 0.506076
Target:  5'- gGCGGccccGGGCCGCGuGUCCCcGCC-CGAGu -3'
miRNA:   3'- -UGCU----CCUGGCGC-CAGGGcUGGcGCUU- -5'
21502 3' -62.4 NC_004812.1 + 4816 0.69 0.452051
Target:  5'- cGCGGGGucgGCaCGCGGcCCCGACCcagcccccuGCGGGg -3'
miRNA:   3'- -UGCUCC---UG-GCGCCaGGGCUGG---------CGCUU- -5'
21502 3' -62.4 NC_004812.1 + 4863 0.67 0.553104
Target:  5'- --aGGGGCCGCGG-CCCG--CGCGAGa -3'
miRNA:   3'- ugcUCCUGGCGCCaGGGCugGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 5039 0.69 0.47869
Target:  5'- gGCGGGGcagcGCCGCGGUcacgggggCCCGGgCGgGAGa -3'
miRNA:   3'- -UGCUCC----UGGCGCCA--------GGGCUgGCgCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.