miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 3' -62.4 NC_004812.1 + 61483 1.05 0.001708
Target:  5'- aACGAGGACCGCGGUCCCGACCGCGAAc -3'
miRNA:   3'- -UGCUCCUGGCGCCAGGGCUGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 137548 0.8 0.101694
Target:  5'- cGCGGgccuGGGCCGCGGUCUCGGCCGCc-- -3'
miRNA:   3'- -UGCU----CCUGGCGCCAGGGCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 124689 0.79 0.103498
Target:  5'- aGCGAGcGGCCGCGGUCgcucguggaguggcUCGACCGCGGGu -3'
miRNA:   3'- -UGCUC-CUGGCGCCAG--------------GGCUGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 95127 0.79 0.10964
Target:  5'- cGCGgucGGGACCGCGGUCCuCGuuCCGCGGGg -3'
miRNA:   3'- -UGC---UCCUGGCGCCAGG-GCu-GGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 7468 0.77 0.143998
Target:  5'- cGCGGGGACCGCGcGcCCCGGCggccgCGCGGAc -3'
miRNA:   3'- -UGCUCCUGGCGC-CaGGGCUG-----GCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 132976 0.77 0.143998
Target:  5'- cGCGGGGACCGCGcGcCCCGGCggccgCGCGGAc -3'
miRNA:   3'- -UGCUCCUGGCGC-CaGGGCUG-----GCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 17044 0.77 0.15122
Target:  5'- gGCGGGGGgCGCcucGGUCCCGGCCGCc-- -3'
miRNA:   3'- -UGCUCCUgGCG---CCAGGGCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 54782 0.77 0.154576
Target:  5'- uACGGGGGCgGCuGGUcgggcccCCCGGCCGCGAGc -3'
miRNA:   3'- -UGCUCCUGgCG-CCA-------GGGCUGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 16760 0.77 0.16267
Target:  5'- cCGGGGGCCGCGGgCCCGAagaCGCGu- -3'
miRNA:   3'- uGCUCCUGGCGCCaGGGCUg--GCGCuu -5'
21502 3' -62.4 NC_004812.1 + 71937 0.76 0.166657
Target:  5'- gGCGAGGACggCGCGGggcggCCCuGCCGCGAc -3'
miRNA:   3'- -UGCUCCUG--GCGCCa----GGGcUGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 19341 0.76 0.166657
Target:  5'- aGCGccGGGGCCGagaaccccuCGGcCCCGACCGCGAAg -3'
miRNA:   3'- -UGC--UCCUGGC---------GCCaGGGCUGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 37154 0.76 0.183494
Target:  5'- -gGAGGGCCGUGGUgcgCUCGGCCGCGu- -3'
miRNA:   3'- ugCUCCUGGCGCCA---GGGCUGGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 76682 0.75 0.197091
Target:  5'- uCGGGGGCCGCGGgaaacaggUCCCGcaggaccuCCGCGAAg -3'
miRNA:   3'- uGCUCCUGGCGCC--------AGGGCu-------GGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 68189 0.75 0.201816
Target:  5'- gGCGGGGGCgCGcCGGacgCCCGGCCGCGc- -3'
miRNA:   3'- -UGCUCCUG-GC-GCCa--GGGCUGGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 61999 0.75 0.206639
Target:  5'- cGCGcccaGGGGCCGCGG-CUCGACCGCa-- -3'
miRNA:   3'- -UGC----UCCUGGCGCCaGGGCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 124454 0.75 0.211064
Target:  5'- cGCGGGGgcgccccGCCGCGGcgggggCCCGGCCGUGGc -3'
miRNA:   3'- -UGCUCC-------UGGCGCCa-----GGGCUGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 27737 0.75 0.21156
Target:  5'- -gGGGGGCCGCGGUCagcgggCCGcCCGCGGc -3'
miRNA:   3'- ugCUCCUGGCGCCAG------GGCuGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 155175 0.75 0.21557
Target:  5'- gGCGGGGACCGgGGcCCCGcaucagcauaauCCGCGAu -3'
miRNA:   3'- -UGCUCCUGGCgCCaGGGCu-----------GGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 124274 0.75 0.21557
Target:  5'- gGCGGGGACCGgGGcCCCGcaucagcauaauCCGCGAu -3'
miRNA:   3'- -UGCUCCUGGCgCCaGGGCu-----------GGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 140622 0.75 0.216583
Target:  5'- gGCGcGGGGCCGCGGggucggcgcCgCCGGCCGCGGGg -3'
miRNA:   3'- -UGC-UCCUGGCGCCa--------G-GGCUGGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.