miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 3' -62.4 NC_004812.1 + 5082 0.73 0.291506
Target:  5'- -gGGGGGCCGgGGU-CCGGCCGgGGAg -3'
miRNA:   3'- ugCUCCUGGCgCCAgGGCUGGCgCUU- -5'
21502 3' -62.4 NC_004812.1 + 83544 0.74 0.226934
Target:  5'- cGCGAGGAgCGCGGUCuCCGggagGCCGUGc- -3'
miRNA:   3'- -UGCUCCUgGCGCCAG-GGC----UGGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 24519 0.74 0.237701
Target:  5'- cGCGGGGGCUGCGGUCggGGCUGCGu- -3'
miRNA:   3'- -UGCUCCUGGCGCCAGggCUGGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 32074 0.74 0.237701
Target:  5'- cGCGGGGcCCGUGGggCCCGGCCcCGGAg -3'
miRNA:   3'- -UGCUCCuGGCGCCa-GGGCUGGcGCUU- -5'
21502 3' -62.4 NC_004812.1 + 129716 0.74 0.248893
Target:  5'- gGCGGGGACCGCGGcggcgUCgGGCCGgGGg -3'
miRNA:   3'- -UGCUCCUGGCGCCa----GGgCUGGCgCUu -5'
21502 3' -62.4 NC_004812.1 + 121273 0.74 0.248893
Target:  5'- gGCGGGGACaCGCGG-CCCGggGCCGCc-- -3'
miRNA:   3'- -UGCUCCUG-GCGCCaGGGC--UGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 112981 0.74 0.25465
Target:  5'- gGCGAuGGAUCGCGGcgCCgCGGCCGcCGAGg -3'
miRNA:   3'- -UGCU-CCUGGCGCCa-GG-GCUGGC-GCUU- -5'
21502 3' -62.4 NC_004812.1 + 68236 0.73 0.266492
Target:  5'- cGCGGGGGCCGgGGcCUCGGCCuCGAc -3'
miRNA:   3'- -UGCUCCUGGCgCCaGGGCUGGcGCUu -5'
21502 3' -62.4 NC_004812.1 + 35577 0.73 0.285085
Target:  5'- -aGGGGGCgGCGGgggcaCCCGACgGCGAc -3'
miRNA:   3'- ugCUCCUGgCGCCa----GGGCUGgCGCUu -5'
21502 3' -62.4 NC_004812.1 + 124274 0.75 0.21557
Target:  5'- gGCGGGGACCGgGGcCCCGcaucagcauaauCCGCGAu -3'
miRNA:   3'- -UGCUCCUGGCgCCaGGGCu-----------GGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 27737 0.75 0.21156
Target:  5'- -gGGGGGCCGCGGUCagcgggCCGcCCGCGGc -3'
miRNA:   3'- ugCUCCUGGCGCCAG------GGCuGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 61999 0.75 0.206639
Target:  5'- cGCGcccaGGGGCCGCGG-CUCGACCGCa-- -3'
miRNA:   3'- -UGC----UCCUGGCGCCaGGGCUGGCGcuu -5'
21502 3' -62.4 NC_004812.1 + 132976 0.77 0.143998
Target:  5'- cGCGGGGACCGCGcGcCCCGGCggccgCGCGGAc -3'
miRNA:   3'- -UGCUCCUGGCGC-CaGGGCUG-----GCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 54782 0.77 0.154576
Target:  5'- uACGGGGGCgGCuGGUcgggcccCCCGGCCGCGAGc -3'
miRNA:   3'- -UGCUCCUGgCG-CCA-------GGGCUGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 16760 0.77 0.16267
Target:  5'- cCGGGGGCCGCGGgCCCGAagaCGCGu- -3'
miRNA:   3'- uGCUCCUGGCGCCaGGGCUg--GCGCuu -5'
21502 3' -62.4 NC_004812.1 + 19341 0.76 0.166657
Target:  5'- aGCGccGGGGCCGagaaccccuCGGcCCCGACCGCGAAg -3'
miRNA:   3'- -UGC--UCCUGGC---------GCCaGGGCUGGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 71937 0.76 0.166657
Target:  5'- gGCGAGGACggCGCGGggcggCCCuGCCGCGAc -3'
miRNA:   3'- -UGCUCCUG--GCGCCa----GGGcUGGCGCUu -5'
21502 3' -62.4 NC_004812.1 + 37154 0.76 0.183494
Target:  5'- -gGAGGGCCGUGGUgcgCUCGGCCGCGu- -3'
miRNA:   3'- ugCUCCUGGCGCCA---GGGCUGGCGCuu -5'
21502 3' -62.4 NC_004812.1 + 76682 0.75 0.197091
Target:  5'- uCGGGGGCCGCGGgaaacaggUCCCGcaggaccuCCGCGAAg -3'
miRNA:   3'- uGCUCCUGGCGCC--------AGGGCu-------GGCGCUU- -5'
21502 3' -62.4 NC_004812.1 + 68189 0.75 0.201816
Target:  5'- gGCGGGGGCgCGcCGGacgCCCGGCCGCGc- -3'
miRNA:   3'- -UGCUCCUG-GC-GCCa--GGGCUGGCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.