miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 5' -54.8 NC_004812.1 + 121700 0.66 0.951445
Target:  5'- --gACGCGGAgGAGGcggagcggcggcGAGAGCaggugCCCGGg -3'
miRNA:   3'- gcaUGUGCCU-UUCC------------UUCUCGg----GGGCC- -5'
21502 5' -54.8 NC_004812.1 + 152509 0.66 0.942881
Target:  5'- --gGCGcCGGGGAGGAc-GGCCCcgCCGGg -3'
miRNA:   3'- gcaUGU-GCCUUUCCUucUCGGG--GGCC- -5'
21502 5' -54.8 NC_004812.1 + 6461 0.66 0.955385
Target:  5'- aCGacCGCGGGcccGGGGAGcGGGCCCUgCGGg -3'
miRNA:   3'- -GCauGUGCCU---UUCCUU-CUCGGGG-GCC- -5'
21502 5' -54.8 NC_004812.1 + 35871 0.66 0.947278
Target:  5'- gCGcAgGCGGggGGGuAG-GCCuCCUGGa -3'
miRNA:   3'- -GCaUgUGCCuuUCCuUCuCGG-GGGCC- -5'
21502 5' -54.8 NC_004812.1 + 7986 0.66 0.942881
Target:  5'- --cGCGCGGGcgccggucAGGGggGcGCUCCCGc -3'
miRNA:   3'- gcaUGUGCCU--------UUCCuuCuCGGGGGCc -5'
21502 5' -54.8 NC_004812.1 + 6843 0.66 0.955385
Target:  5'- gCGgcccuCGCGGucGGcGAGGcGGCCCgCCGGg -3'
miRNA:   3'- -GCau---GUGCCuuUC-CUUC-UCGGG-GGCC- -5'
21502 5' -54.8 NC_004812.1 + 52410 0.66 0.947278
Target:  5'- aCGUA-GCGGAAGGcGAAGAagGCCgccgccagCCCGGc -3'
miRNA:   3'- -GCAUgUGCCUUUC-CUUCU--CGG--------GGGCC- -5'
21502 5' -54.8 NC_004812.1 + 82351 0.66 0.962602
Target:  5'- gGUGCGCGGccGGGgcGAGgcguaCCUgCGGg -3'
miRNA:   3'- gCAUGUGCCuuUCCuuCUC-----GGGgGCC- -5'
21502 5' -54.8 NC_004812.1 + 30250 0.66 0.947278
Target:  5'- --cGCugGGGAAGuGccaccacGCCCCCGGg -3'
miRNA:   3'- gcaUGugCCUUUC-Cuucu---CGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 141449 0.66 0.946848
Target:  5'- aCGgAgGCGGuccAGGucgugcgGGGAGCCCCCGa -3'
miRNA:   3'- -GCaUgUGCCuu-UCC-------UUCUCGGGGGCc -5'
21502 5' -54.8 NC_004812.1 + 22181 0.66 0.947278
Target:  5'- -cUGCAUGGucGGGGAGuagagcuGCCCCaGGg -3'
miRNA:   3'- gcAUGUGCCuuUCCUUCu------CGGGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 95876 0.66 0.951445
Target:  5'- gGUGgGCcGAGGGGgcGGGCCCCgaugcccgcccuCGGg -3'
miRNA:   3'- gCAUgUGcCUUUCCuuCUCGGGG------------GCC- -5'
21502 5' -54.8 NC_004812.1 + 121635 0.66 0.947278
Target:  5'- aGgcgGCGCGGccggcGGAGGAGGAgcgGCCUgCGGc -3'
miRNA:   3'- gCa--UGUGCC-----UUUCCUUCU---CGGGgGCC- -5'
21502 5' -54.8 NC_004812.1 + 110049 0.66 0.951445
Target:  5'- gGUGCGCGGcgacccGGGGcucGGGCCCgaCGGg -3'
miRNA:   3'- gCAUGUGCCuu----UCCUu--CUCGGGg-GCC- -5'
21502 5' -54.8 NC_004812.1 + 5416 0.66 0.955385
Target:  5'- --gACGCGGc-GGGccGGGGGCCCCCc- -3'
miRNA:   3'- gcaUGUGCCuuUCC--UUCUCGGGGGcc -5'
21502 5' -54.8 NC_004812.1 + 112671 0.66 0.947278
Target:  5'- aGUGCuccgcgucguCGGAcgacGAGGAcauGGAgGCCUCCGGc -3'
miRNA:   3'- gCAUGu---------GCCU----UUCCU---UCU-CGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 78956 0.66 0.955385
Target:  5'- gGUGCGcCGGggGucGGggGuGCgCCgGGg -3'
miRNA:   3'- gCAUGU-GCCuuU--CCuuCuCGgGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 90684 0.66 0.951445
Target:  5'- gGUAgAUGGGGAGGcgcuuGAGcAGCaCCCaCGGg -3'
miRNA:   3'- gCAUgUGCCUUUCC-----UUC-UCG-GGG-GCC- -5'
21502 5' -54.8 NC_004812.1 + 71043 0.66 0.955385
Target:  5'- --cGCugGGGAGGGcGGccGCCCCUGcGg -3'
miRNA:   3'- gcaUGugCCUUUCCuUCu-CGGGGGC-C- -5'
21502 5' -54.8 NC_004812.1 + 113346 0.66 0.947278
Target:  5'- gGUGCugGGuuccucGGuGggGGGCUacaaCCCGGa -3'
miRNA:   3'- gCAUGugCCuu----UC-CuuCUCGG----GGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.