miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 5' -54.8 NC_004812.1 + 61517 1.12 0.003047
Target:  5'- aCGUACACGGAAAGGAAGAGCCCCCGGa -3'
miRNA:   3'- -GCAUGUGCCUUUCCUUCUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 148859 0.85 0.14983
Target:  5'- --cGCACGGggGGGGAGGcgggcGCCCCCGGc -3'
miRNA:   3'- gcaUGUGCCuuUCCUUCU-----CGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 117958 0.85 0.14983
Target:  5'- --cGCACGGggGGGGAGGcgggcGCCCCCGGc -3'
miRNA:   3'- gcaUGUGCCuuUCCUUCU-----CGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 210 0.81 0.257603
Target:  5'- --aACGCGGGGAGGggGGGCCCaaGGc -3'
miRNA:   3'- gcaUGUGCCUUUCCuuCUCGGGggCC- -5'
21502 5' -54.8 NC_004812.1 + 31111 0.81 0.257603
Target:  5'- --aACGCGGGGAGGggGGGCCCaaGGc -3'
miRNA:   3'- gcaUGUGCCUUUCCuuCUCGGGggCC- -5'
21502 5' -54.8 NC_004812.1 + 6290 0.8 0.324655
Target:  5'- --gGCACGGccAGGggGAgcggcGCCCCCGGg -3'
miRNA:   3'- gcaUGUGCCuuUCCuuCU-----CGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 37191 0.8 0.324655
Target:  5'- --gGCACGGccAGGggGAgcggcGCCCCCGGg -3'
miRNA:   3'- gcaUGUGCCuuUCCuuCU-----CGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 150966 0.79 0.361176
Target:  5'- gCGgACGCGGGGAGGAAGAGaccaugccgcggCCCCGGu -3'
miRNA:   3'- -GCaUGUGCCUUUCCUUCUCg-----------GGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 25455 0.79 0.361176
Target:  5'- cCGgcggACGCGGGGAGGAAGAGaccaugccgcggCCCCGGu -3'
miRNA:   3'- -GCa---UGUGCCUUUCCUUCUCg-----------GGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 60602 0.79 0.362759
Target:  5'- cCGUA-GCGGAGGGGGcgcucggcGGGCCCCCGGa -3'
miRNA:   3'- -GCAUgUGCCUUUCCUu-------CUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 54130 0.79 0.362759
Target:  5'- cCGUAC-CGGAGGGGGGugggguGGGCUCCCGGc -3'
miRNA:   3'- -GCAUGuGCCUUUCCUU------CUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 26018 0.78 0.395404
Target:  5'- gCGgGCcCGGAGGGGcuccacguccAGGGGCCCCCGGa -3'
miRNA:   3'- -GCaUGuGCCUUUCC----------UUCUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 93792 0.77 0.4211
Target:  5'- gGUcgGCGGAGAugcugcGGAGGAGcCCCCCGGg -3'
miRNA:   3'- gCAugUGCCUUU------CCUUCUC-GGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 36236 0.77 0.429886
Target:  5'- --gGCACGGAGgcGGGggGAGgCCCgGGa -3'
miRNA:   3'- gcaUGUGCCUU--UCCuuCUCgGGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 36176 0.77 0.429886
Target:  5'- --gGCACGGAGgcGGGggGAGgCCCgGGa -3'
miRNA:   3'- gcaUGUGCCUU--UCCuuCUCgGGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 5335 0.77 0.429886
Target:  5'- --gGCACGGAGgcGGGggGAGgCCCgGGa -3'
miRNA:   3'- gcaUGUGCCUU--UCCuuCUCgGGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 5275 0.77 0.429886
Target:  5'- --gGCACGGAGgcGGGggGAGgCCCgGGa -3'
miRNA:   3'- gcaUGUGCCUU--UCCuuCUCgGGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 54956 0.77 0.447777
Target:  5'- gGUACACGcccGggGGGuagcgguAGAGCCCCuCGGg -3'
miRNA:   3'- gCAUGUGC---CuuUCCu------UCUCGGGG-GCC- -5'
21502 5' -54.8 NC_004812.1 + 124480 0.77 0.456876
Target:  5'- --cGCcCGGGcGGGGAGGAGCCCCCGcGg -3'
miRNA:   3'- gcaUGuGCCU-UUCCUUCUCGGGGGC-C- -5'
21502 5' -54.8 NC_004812.1 + 155381 0.77 0.456877
Target:  5'- --cGCcCGGGcGGGGAGGAGCCCCCGcGg -3'
miRNA:   3'- gcaUGuGCCU-UUCCUUCUCGGGGGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.