miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 5' -54.8 NC_004812.1 + 62 0.68 0.911593
Target:  5'- gCGUuuGgGCGGGcucccGGgcGGGCUCCCGGg -3'
miRNA:   3'- -GCA--UgUGCCUuu---CCuuCUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 107 0.72 0.693869
Target:  5'- gCGcGCGCGGGGccGGGAgcccgcccgGGAGCCcgCCCGGg -3'
miRNA:   3'- -GCaUGUGCCUU--UCCU---------UCUCGG--GGGCC- -5'
21502 5' -54.8 NC_004812.1 + 210 0.81 0.257603
Target:  5'- --aACGCGGGGAGGggGGGCCCaaGGc -3'
miRNA:   3'- gcaUGUGCCUUUCCuuCUCGGGggCC- -5'
21502 5' -54.8 NC_004812.1 + 256 0.71 0.743051
Target:  5'- --cGCGCGGGAggaGGGggGGGUCuCCCGc -3'
miRNA:   3'- gcaUGUGCCUU---UCCuuCUCGG-GGGCc -5'
21502 5' -54.8 NC_004812.1 + 673 0.67 0.917395
Target:  5'- --cGgGCGGcgcGAGGGGAGcgcGUCCCCGGg -3'
miRNA:   3'- gcaUgUGCC---UUUCCUUCu--CGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 1425 0.7 0.833159
Target:  5'- gCGgcCGCGGGGAGGGgccGGGGCCgcgagggCCGGg -3'
miRNA:   3'- -GCauGUGCCUUUCCU---UCUCGGg------GGCC- -5'
21502 5' -54.8 NC_004812.1 + 1564 0.68 0.879145
Target:  5'- gGUGCucccCGGGuucccGGAAGAGCCCUCu- -3'
miRNA:   3'- gCAUGu---GCCUuu---CCUUCUCGGGGGcc -5'
21502 5' -54.8 NC_004812.1 + 1832 0.74 0.59273
Target:  5'- cCGU-CGgGGGAGGGGacaugcugaugAGAGCCCgCCGGg -3'
miRNA:   3'- -GCAuGUgCCUUUCCU-----------UCUCGGG-GGCC- -5'
21502 5' -54.8 NC_004812.1 + 2052 0.69 0.841312
Target:  5'- gCGggggGCGCgGGGGAGGggGcgcGCCCCCc- -3'
miRNA:   3'- -GCa---UGUG-CCUUUCCuuCu--CGGGGGcc -5'
21502 5' -54.8 NC_004812.1 + 3502 0.67 0.928294
Target:  5'- gCGgGCGCGGGcccGGGGccGGcGGCCCCgGGg -3'
miRNA:   3'- -GCaUGUGCCUu--UCCU--UC-UCGGGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 3966 0.66 0.959103
Target:  5'- cCGgGCACGGcggccAGGucgccgccGAGCCCUCGGc -3'
miRNA:   3'- -GCaUGUGCCuu---UCCuu------CUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 4635 0.69 0.87199
Target:  5'- gCGgggGgGCGGGAcgcccgcgcgGGGAGGGGCUCgCCGGn -3'
miRNA:   3'- -GCa--UgUGCCUU----------UCCUUCUCGGG-GGCC- -5'
21502 5' -54.8 NC_004812.1 + 4675 0.74 0.59273
Target:  5'- cCGUcgcGCGcCGGcgccGAGGGGAGcGCCCCCGGc -3'
miRNA:   3'- -GCA---UGU-GCC----UUUCCUUCuCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 5044 0.68 0.892801
Target:  5'- cCGgggGCGCGcGAGGGcGccGcGCCCCCGGc -3'
miRNA:   3'- -GCa--UGUGC-CUUUC-CuuCuCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 5131 0.74 0.612969
Target:  5'- gCGgGCGCGGAGGcGGGAGGGCCgCgGGc -3'
miRNA:   3'- -GCaUGUGCCUUU-CCUUCUCGGgGgCC- -5'
21502 5' -54.8 NC_004812.1 + 5218 0.69 0.849278
Target:  5'- ----aGCaGAGAGGGgcgGGGGCUCCCGGg -3'
miRNA:   3'- gcaugUGcCUUUCCU---UCUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 5275 0.77 0.429886
Target:  5'- --gGCACGGAGgcGGGggGAGgCCCgGGa -3'
miRNA:   3'- gcaUGUGCCUU--UCCuuCUCgGGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 5335 0.77 0.429886
Target:  5'- --gGCACGGAGgcGGGggGAGgCCCgGGa -3'
miRNA:   3'- gcaUGUGCCUU--UCCuuCUCgGGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 5389 0.67 0.922416
Target:  5'- uCGcgGCGCGGGGccGGggGcgucgccGGCCCCgCGGa -3'
miRNA:   3'- -GCa-UGUGCCUUu-CCuuC-------UCGGGG-GCC- -5'
21502 5' -54.8 NC_004812.1 + 5416 0.66 0.955385
Target:  5'- --gACGCGGc-GGGccGGGGGCCCCCc- -3'
miRNA:   3'- gcaUGUGCCuuUCC--UUCUCGGGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.