miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21502 5' -54.8 NC_004812.1 + 156000 0.73 0.66368
Target:  5'- gCGUGCucGCGGcgcGGGGGAGGGGaCgCCCGGg -3'
miRNA:   3'- -GCAUG--UGCC---UUUCCUUCUC-GgGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 4675 0.74 0.59273
Target:  5'- cCGUcgcGCGcCGGcgccGAGGGGAGcGCCCCCGGc -3'
miRNA:   3'- -GCA---UGU-GCC----UUUCCUUCuCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 5591 0.74 0.612969
Target:  5'- gGgcCACGGggGGGGcGGGGuCCCCCaGGg -3'
miRNA:   3'- gCauGUGCCuuUCCU-UCUC-GGGGG-CC- -5'
21502 5' -54.8 NC_004812.1 + 5131 0.74 0.612969
Target:  5'- gCGgGCGCGGAGGcGGGAGGGCCgCgGGc -3'
miRNA:   3'- -GCaUGUGCCUUU-CCUUCUCGGgGgCC- -5'
21502 5' -54.8 NC_004812.1 + 121746 0.74 0.623113
Target:  5'- --cGCGCGGcgGGGGGcgccGGGCCUCCGGg -3'
miRNA:   3'- gcaUGUGCCuuUCCUU----CUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 68705 0.73 0.643414
Target:  5'- gCGUACGCGGA--GGAuauaaAGcCCCCCGGc -3'
miRNA:   3'- -GCAUGUGCCUuuCCUuc---UC-GGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 8237 0.73 0.653555
Target:  5'- cCGgcgGC-CGGGccGGggGuccGCCCCCGGg -3'
miRNA:   3'- -GCa--UGuGCCUuuCCuuCu--CGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 41192 0.73 0.653555
Target:  5'- aCGUcGCuCGGGcgugaaguugaaGGGGAAGAcgGCCCCCGGu -3'
miRNA:   3'- -GCA-UGuGCCU------------UUCCUUCU--CGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 94048 0.73 0.662668
Target:  5'- uGUGaa-GGAcgccGAGGAuccucagGGGGCCCCCGGg -3'
miRNA:   3'- gCAUgugCCU----UUCCU-------UCUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 1832 0.74 0.59273
Target:  5'- cCGU-CGgGGGAGGGGacaugcugaugAGAGCCCgCCGGg -3'
miRNA:   3'- -GCAuGUgCCUUUCCU-----------UCUCGGG-GGCC- -5'
21502 5' -54.8 NC_004812.1 + 106550 0.76 0.494222
Target:  5'- aCGUACGcCGGGgagcugAGGGAGGAGgCgCCCGGg -3'
miRNA:   3'- -GCAUGU-GCCU------UUCCUUCUCgG-GGGCC- -5'
21502 5' -54.8 NC_004812.1 + 86490 0.76 0.475366
Target:  5'- uCGUugACGGAGccGcugcGGGCCCCCGGg -3'
miRNA:   3'- -GCAugUGCCUUucCuu--CUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 210 0.81 0.257603
Target:  5'- --aACGCGGGGAGGggGGGCCCaaGGc -3'
miRNA:   3'- gcaUGUGCCUUUCCuuCUCGGGggCC- -5'
21502 5' -54.8 NC_004812.1 + 6290 0.8 0.324655
Target:  5'- --gGCACGGccAGGggGAgcggcGCCCCCGGg -3'
miRNA:   3'- gcaUGUGCCuuUCCuuCU-----CGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 150966 0.79 0.361176
Target:  5'- gCGgACGCGGGGAGGAAGAGaccaugccgcggCCCCGGu -3'
miRNA:   3'- -GCaUGUGCCUUUCCUUCUCg-----------GGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 26018 0.78 0.395404
Target:  5'- gCGgGCcCGGAGGGGcuccacguccAGGGGCCCCCGGa -3'
miRNA:   3'- -GCaUGuGCCUUUCC----------UUCUCGGGGGCC- -5'
21502 5' -54.8 NC_004812.1 + 5275 0.77 0.429886
Target:  5'- --gGCACGGAGgcGGGggGAGgCCCgGGa -3'
miRNA:   3'- gcaUGUGCCUU--UCCuuCUCgGGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 5335 0.77 0.429886
Target:  5'- --gGCACGGAGgcGGGggGAGgCCCgGGa -3'
miRNA:   3'- gcaUGUGCCUU--UCCuuCUCgGGGgCC- -5'
21502 5' -54.8 NC_004812.1 + 54956 0.77 0.447777
Target:  5'- gGUACACGcccGggGGGuagcgguAGAGCCCCuCGGg -3'
miRNA:   3'- gCAUGUGC---CuuUCCu------UCUCGGGG-GCC- -5'
21502 5' -54.8 NC_004812.1 + 124480 0.77 0.456876
Target:  5'- --cGCcCGGGcGGGGAGGAGCCCCCGcGg -3'
miRNA:   3'- gcaUGuGCCU-UUCCUUCUCGGGGGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.